BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77659at6073Duplicated594.9597.0g6948.t1.1GRIP and coiled-coil domain-containing protein 1JBrowse
77662at6073Duplicated337.2369.0BRAKERIOWP00000010062.1mRNA-decapping enzyme 1A-likeJBrowse
77662at6073Duplicated337.2369.0g17420.t1.1mRNA-decapping enzyme 1A-likeJBrowse
77664at6073Duplicated287.0192.0BRAKERIOWP00000018010.1microcephalin-likeJBrowse
77664at6073Duplicated287.0192.0g15205.t1.1microcephalin-likeJBrowse
77665at6073Duplicated786.5619.0BRAKERIOWP00000008274.1heterogeneous nuclear ribonucleoprotein U-likeJBrowse
77665at6073Duplicated786.5619.0g3762.t1.1heterogeneous nuclear ribonucleoprotein U-likeJBrowse
77683at6073Duplicated356.0320.0BRAKERIOWP00000015815.1male-specific lethal 3 homologJBrowse
77683at6073Duplicated356.0320.0g84.t1.1male-specific lethal 3 homologJBrowse
77690at6073Duplicated237.6208.0BRAKERIOWP00000005040.1AP-1 complex-associated regulatory proteinJBrowse
77690at6073Duplicated237.6208.0g565.t1.1AP-1 complex-associated regulatory proteinJBrowse
77699at6073Fragmented659.9715.0BRAKERIOWP00000019866.1rho GTPase-activating protein 100F-likeJBrowse
77723at6073Duplicated353.2373.0BRAKERIOWP00000009489.1microprocessor complex subunit DGCR8-likeJBrowse
77723at6073Duplicated353.2373.0g718.t1.1microprocessor complex subunit DGCR8-likeJBrowse
77725at6073Duplicated221.8186.0BRAKERIOWP00000014473.1RRP15-like proteinJBrowse
77725at6073Duplicated221.8186.0g14047.t1.1RRP15-like proteinJBrowse
77725at6073Duplicated217.8186.0BRAKERIOWP00000014474.1RRP15-like proteinJBrowse
77725at6073Duplicated217.8186.0g14047.t2.1RRP15-like proteinJBrowse
77733at6073Duplicated436.6703.0BRAKERIOWP00000001361.1KAT8 regulatory NSL complex subunit 1-likeJBrowse
77733at6073Duplicated436.6703.0g8028.t1.1KAT8 regulatory NSL complex subunit 1-likeJBrowse
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