BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77782at6073Duplicated202.4310.0BRAKERIOWP00000005268.1plasminogen activator inhibitor 1 RNA-binding protein-likeJBrowse
77782at6073Duplicated202.4310.0g11625.t1.1plasminogen activator inhibitor 1 RNA-binding protein-likeJBrowse
77815at6073Duplicated310.3563.0BRAKERIOWP00000014916.1Transcription factor TFIIIB component BJBrowse
77815at6073Duplicated310.3563.0g16472.t1.1Transcription factor TFIIIB component BJBrowse
77821at6073Duplicated177.0211.0BRAKERIOWP00000007420.1Zinc finger CCHC domain-containing protein 7JBrowse
77821at6073Duplicated177.0211.0g10095.t1.1Zinc finger CCHC domain-containing protein 7JBrowse
77830at6073Duplicated631.51059.0BRAKERIOWP00000002569.1E3 ubiquitin-protein ligase RBBP6-likeJBrowse
77830at6073Duplicated631.51059.0g9382.t1.1E3 ubiquitin-protein ligase RBBP6-likeJBrowse
77845at6073Duplicated142.9243.0BRAKERIOWP00000000823.1syndecan-2JBrowse
77845at6073Duplicated142.9243.0g19053.t1.1syndecan-2JBrowse
77846at6073Duplicated293.7304.0BRAKERIOWP00000016831.1Ubiquitin-associated protein 1JBrowse
77846at6073Duplicated293.7304.0g15299.t1.1Ubiquitin-associated protein 1JBrowse
77849at6073Duplicated427.7535.0BRAKERIOWP00000010653.1protein transport protein Sec16A-likeJBrowse
77849at6073Duplicated427.7535.0g13260.t1.1protein transport protein Sec16A-likeJBrowse
77853at6073Duplicated743.91108.0BRAKERIOWP00000007898.1uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like isoform X1JBrowse
77853at6073Duplicated743.91108.0g17413.t1.1uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like isoform X1JBrowse
77859at6073Duplicated202.9234.0BRAKERIOWP00000015833.1craniofacial development protein 1JBrowse
77859at6073Duplicated202.9234.0g20451.t1.1craniofacial development protein 1JBrowse
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