BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
671at6073Duplicated321.8142.0g15152.t1.1Thioredoxin-like 4AJBrowse
686at6073Fragmented629.6608.0BRAKERKREP00000005526.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
757at6073Fragmented120.394.0BRAKERKREP00000027240.12-aminoethanethiol dioxygenase-likeJBrowse
765at6073Duplicated127.5316.0BRAKERKREP00000018418.1zinc finger Y-chromosomal 2-likeJBrowse
765at6073Duplicated127.5316.0g6743.t1.1zinc finger Y-chromosomal 2-likeJBrowse
781at6073Duplicated472.1214.0BRAKERKREP00000017252.1MOB kinase activator 1BJBrowse
781at6073Duplicated472.1214.0g16871.t1.1MOB kinase activator 1BJBrowse
788at6073Duplicated1111.4622.0BRAKERKREP00000005656.1protein arginine N-methyltransferase 5JBrowse
788at6073Duplicated1111.4622.0g10201.t1.1protein arginine N-methyltransferase 5JBrowse
810at6073Duplicated649.5502.0BRAKERKREP00000016954.1membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinaseJBrowse
810at6073Duplicated649.5502.0g19443.t1.1membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinaseJBrowse
837at6073Duplicated359.1178.0BRAKERKREP00000005480.1ADP-ribosylation factor-like protein 5BJBrowse
837at6073Duplicated359.1178.0g12248.t1.1ADP-ribosylation factor-like protein 5BJBrowse
916at6073Duplicated653.4458.0BRAKERKREP00000005323.1Alpha-(1,3)-fucosyltransferase 11JBrowse
916at6073Duplicated653.4458.0g24953.t1.1Alpha-(1,3)-fucosyltransferase 11JBrowse
916at6073Duplicated714.4456.0BRAKERKREP00000005222.1Alpha-(1,3)-fucosyltransferase 11JBrowse
916at6073Duplicated714.4456.0g24951.t1.1Alpha-(1,3)-fucosyltransferase 11JBrowse
932at6073Duplicated429.8238.0BRAKERKREP00000004663.1tRNA (guanine-N(7)-)-methyltransferaseJBrowse
932at6073Duplicated429.8238.0g5840.t1.1tRNA (guanine-N(7)-)-methyltransferaseJBrowse
935at6073Duplicated273.2152.0BRAKERKREP00000001552.1ORM1-like protein 1JBrowse
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