BUSCO Gene Details in Montipora cactus

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Montipora cactusBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 74.1% [S: 70.8%, D: 3.3%] F: 15.7%, M: 10.1%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,375 (74.1%)2,268 (70.8%)107 (3.3%)504 (15.7%)324 (10.1%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Montipora cactus: 5,724 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
614at6073Duplicated640.2417.0BRAKERNUSP00000009493.1F-box only protein 42JBrowse
614at6073Duplicated640.2417.0g31738.t1.1F-box only protein 42JBrowse
625at6073Duplicated319.4179.0BRAKERNUSP00000016101.1regulator of G-protein signaling 19JBrowse
625at6073Duplicated319.4179.0g5066.t1.1regulator of G-protein signaling 19JBrowse
635at6073Duplicated451.7264.0BRAKERNUSP00000012798.1START domain-containing protein 10JBrowse
635at6073Duplicated451.7264.0g45679.t1.1START domain-containing protein 10JBrowse
639at6073Duplicated397.7248.0BRAKERNUSP00000039931.1uncharacterized protein LOC116305772JBrowse
639at6073Duplicated397.7248.0g20645.t1.1uncharacterized protein LOC116305772JBrowse
646at6073Fragmented176.7122.0BRAKERNUSP00000008823.1uncharacterized protein LOC114976257 isoform X1JBrowse
671at6073Duplicated325.1142.0BRAKERNUSP00000039561.1Thioredoxin-like 4AJBrowse
671at6073Duplicated325.1142.0g36430.t1.1Thioredoxin-like 4AJBrowse
686at6073Duplicated1204.3774.0BRAKERNUSP00000030042.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated1204.3774.0g49444.t3.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated1195.0774.0BRAKERNUSP00000030040.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated1195.0774.0BRAKERNUSP00000030041.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated1195.0774.0g49444.t1.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated1195.0774.0g49444.t2.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
765at6073Duplicated458.4342.0BRAKERNUSP00000019924.1zinc finger Y-chromosomal 2-likeJBrowse
765at6073Duplicated458.4342.0g23441.t1.1zinc finger Y-chromosomal 2-likeJBrowse
781at6073Duplicated479.4211.0BRAKERNUSP00000022139.1MOB kinase activator 1BJBrowse
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