BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
599at6073Duplicated162.1112.0g1730.t1.1guanine nucleotide exchange factor MSS4JBrowse
614at6073Duplicated513.6400.0BRAKERIOWP00000000254.1F-box only protein 42JBrowse
614at6073Duplicated513.6400.0g13904.t1.1F-box only protein 42JBrowse
614at6073Duplicated513.5400.0969_t.1F-box only protein 42JBrowse
614at6073Duplicated513.5400.0BRAKERIOWP00000000225.1F-box only protein 42JBrowse
635at6073Duplicated364.0261.0BRAKERIOWP00000003255.1START domain-containing protein 10JBrowse
635at6073Duplicated364.0261.0g2507.t1.1START domain-containing protein 10JBrowse
646at6073Duplicated204.0150.0BRAKERIOWP00000001014.1uncharacterized protein LOC114976257 isoform X1JBrowse
646at6073Duplicated204.0150.0g7313.t1.1uncharacterized protein LOC114976257 isoform X1JBrowse
671at6073Duplicated316.9142.0BRAKERIOWP00000006991.1Thioredoxin-like 4AJBrowse
671at6073Duplicated316.9142.0g15028.t1.1Thioredoxin-like 4AJBrowse
686at6073Duplicated816.1827.0BRAKERIOWP00000000666.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
686at6073Duplicated816.1827.0g6978.t1.1reversion-inducing cysteine-rich protein with Kazal motifs-likeJBrowse
765at6073Duplicated279.7315.0BRAKERIOWP00000010602.1zinc finger Y-chromosomal 2-likeJBrowse
765at6073Duplicated279.7315.0g3598.t1.1zinc finger Y-chromosomal 2-likeJBrowse
781at6073Duplicated473.0214.0BRAKERIOWP00000008159.1MOB kinase activator 1BJBrowse
781at6073Duplicated473.0214.0g4086.t1.1MOB kinase activator 1BJBrowse
788at6073Duplicated1019.9580.0BRAKERIOWP00000004272.1protein arginine N-methyltransferase 5JBrowse
788at6073Duplicated1019.9580.0g5830.t1.1protein arginine N-methyltransferase 5JBrowse
810at6073Duplicated602.0501.0BRAKERIOWP00000007196.1membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinaseJBrowse
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