BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
18600at6073Complete229.4201BRAKERIOWP00000010263.1coiled-coil domain-containing protein 103JBrowse
18664at6073Complete1687.21371BRAKERIOWP00000014923.1transmembrane protein 131JBrowse
18667at6073Complete222.1116BRAKERIOWP00000013554.1transcription initiation factor TFIID subunit 13JBrowse
18686at6073Complete495.6258BRAKERIOWP00000000678.1proteasome subunit beta type-7JBrowse
18704at6073Complete356.4291BRAKERIOWP00000009818.1WD repeat-containing protein 38JBrowse
18707at6073Complete362.4454BRAKERIOWP00000014015.1spermatogenesis-associated protein 6-likeJBrowse
18742at6073Complete893.9624BRAKERIOWP00000017663.1E3 ubiquitin-protein ligase CBL-B-B-likeJBrowse
18784at6073Complete1700.3841BRAKERIOWP00000002186.1major vault proteinJBrowse
18842at6073Complete726.1361BRAKERIOWP00000011061.1ubiquitin carboxyl-terminal hydrolase 46JBrowse
18892at6073Complete354.5283BRAKERIOWP00000014389.1RNA pseudouridylate synthase domain-containing protein 4JBrowse
18919at6073Complete233.3214BRAKERIOWP00000008489.1nanos homolog 1JBrowse
18927at6073Complete481.0574BRAKERIOWP00000004431.1E3 ubiquitin-protein ligase RNF216JBrowse
18942at6073Complete259.3158BRAKERIOWP00000007028.1deoxyuridine 5'-triphosphate nucleotidohydrolaseJBrowse
18945at6073Fragmented559.1290BRAKERIOWP00000003097.1E3 ubiquitin-protein ligase RNFT1-likeJBrowse
19054at6073Complete596.8434BRAKERIOWP00000010682.1actin-related protein 10JBrowse
19098at6073Complete141.286BRAKERIOWP00000008636.1uncharacterized bolA-like protein C4B3.11cJBrowse
19102at6073Complete856.8534BRAKERIOWP00000011862.1CAP Gly-rich domainJBrowse
19190at6073Fragmented312.1495BRAKERIOWP00000014828.1death domain-associated protein 6JBrowse
19201at6073Complete1001.0971BRAKERIOWP00000002741.1GTPase-activating protein and VPS9 domain-containing protein 1JBrowse
19235at6073Complete397.9208BRAKERIOWP00000010274.160S ribosomal protein L13JBrowse
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