Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 21672at6073 | Complete | 484.2 | 509 | BRAKERHOCP00005008847.1 | small conductance calcium-activated potassium channel protein 2 | JBrowse |
| 21682at6073 | Complete | 453.6 | 285 | BRAKERHOCP00005010753.1 | nicotinate-nucleotide pyrophosphorylase | JBrowse |
| 21716at6073 | Complete | 500.6 | 415 | BRAKERHOCP00005014386.1 | Saccharopine dehydrogenase, NADP binding domain | JBrowse |
| 21775at6073 | Complete | 343.0 | 187 | BRAKERHOCP00005010706.1 | 60S ribosomal protein L18 | JBrowse |
| 21792at6073 | Duplicated | 312.1 | 323 | BRAKERHOCP00005009828.1 | transcription factor SOX-9 | JBrowse |
| 21792at6073 | Duplicated | 311.6 | 291 | BRAKERHOCP00005010912.1 | transcription factor SOX-9 | JBrowse |
| 21806at6073 | Fragmented | 211.5 | 195 | BRAKERHOCP00005011111.1 | protein HEXIM-like | JBrowse |
| 21859at6073 | Complete | 836.5 | 515 | BRAKERHOCP00005002459.1 | Bloom syndrome protein | JBrowse |
| 21925at6073 | Complete | 172.8 | 155 | BRAKERHOCP00005015377.1 | ATP synthase subunit d, mitochondrial | JBrowse |
| 21963at6073 | Complete | 288.5 | 266 | BRAKERHOCP00005011226.1 | 39S ribosomal protein L45, mitochondrial | JBrowse |
| 21973at6073 | Complete | 510.9 | 414 | BRAKERHOCP00005011325.1 | ribosome biogenesis protein wdr12 | JBrowse |
| 22162at6073 | Complete | 194.5 | 338 | BRAKERHOCP00005004699.1 | uncharacterized protein C2orf81 homolog | JBrowse |
| 22181at6073 | Complete | 2074.2 | 1765 | BRAKERHOCP00005011811.1 | voltage-dependent T-type calcium channel subunit alpha-1H-like | JBrowse |
| 22263at6073 | Complete | 497.8 | 437 | BRAKERHOCP00005000730.1 | dynein axonemal assembly factor 3 | JBrowse |
| 22276at6073 | Complete | 109.8 | 107 | BRAKERHOCP00005011727.1 | Mediator of RNA polymerase II transcription subunit 11 | JBrowse |
| 22300at6073 | Fragmented | 602.5 | 538 | BRAKERHOCP00005010329.1 | signal transducer and activator of transcription 5B | JBrowse |
| 22336at6073 | Complete | 270.9 | 567 | BRAKERHOCP00005010781.1 | centrosomal protein of 70 kDa-like | JBrowse |
| 22352at6073 | Fragmented | 234.3 | 155 | BRAKERHOCP00005015600.1 | Charged multivesicular body protein 2b | JBrowse |
| 22360at6073 | Complete | 2019.7 | 1387 | BRAKERHOCP00005019118.1 | Lysine-specific demethylase 5A | JBrowse |
| 22364at6073 | Complete | 163.4 | 161 | BRAKERHOCP00005019032.1 | Claudin domain-containing protein 2 | JBrowse |