Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 25737at6073 | Complete | 424.3 | 319 | BRAKERHOCP00005012266.1 | AH receptor-interacting | JBrowse |
| 25805at6073 | Complete | 648.6 | 769 | BRAKERHOCP00005002409.1 | nonsense-mediated mRNA decay factor SMG5 | JBrowse |
| 25815at6073 | Fragmented | 263.3 | 250 | BRAKERHOCP00005009834.1 | cyclic AMP-responsive element-binding protein 1-like | JBrowse |
| 25839at6073 | Fragmented | 316.0 | 183 | BRAKERHOCP00005007429.1 | Beta-soluble NSF attachment | JBrowse |
| 25895at6073 | Complete | 1373.5 | 884 | BRAKERHOCP00005001616.1 | ras GTPase-activating protein 1-like | JBrowse |
| 25974at6073 | Fragmented | 715.5 | 700 | BRAKERHOCP00005020186.1 | peroxisome assembly factor 2 | JBrowse |
| 26004at6073 | Complete | 428.3 | 223 | BRAKERHOCP00005015020.1 | NADH dehydrogenase | JBrowse |
| 26020at6073 | Fragmented | 386.5 | 297 | BRAKERHOCP00005015116.1 | 28S ribosomal protein S9, mitochondrial-like | JBrowse |
| 26029at6073 | Complete | 854.3 | 501 | BRAKERHOCP00005004855.1 | hippocampus abundant transcript 1 protein-like | JBrowse |
| 26078at6073 | Duplicated | 630.8 | 512 | BRAKERHOCP00005015148.1 | radial spoke head protein 4 homolog A | JBrowse |
| 26078at6073 | Duplicated | 599.2 | 438 | BRAKERHOCP00005006912.1 | radial spoke head protein 4 homolog A | JBrowse |
| 26082at6073 | Complete | 212.9 | 194 | BRAKERHOCP00005003664.1 | uncharacterized protein LOC116298590 | JBrowse |
| 26085at6073 | Complete | 2470.1 | 2008 | BRAKERHOCP00005014955.1 | chromodomain-helicase-DNA-binding protein 8 | JBrowse |
| 26116at6073 | Complete | 1732.0 | 1071 | BRAKERHOCP00005009413.1 | ubiquitin carboxyl-terminal hydrolase 7 | JBrowse |
| 26137at6073 | Complete | 435.5 | 374 | BRAKERHOCP00005001069.1 | prolactin regulatory element-binding protein-like | JBrowse |
| 26273at6073 | Complete | 321.0 | 150 | BRAKERHOCP00005003251.1 | small ribosomal subunit protein uS11 | JBrowse |
| 26355at6073 | Complete | 508.9 | 544 | BRAKERHOCP00005007222.1 | inner nuclear membrane protein Man1-like | JBrowse |
| 26367at6073 | Fragmented | 346.1 | 373 | BRAKERHOCP00005006570.1 | rho guanine nucleotide exchange factor 10-like isoform X1 | JBrowse |
| 26417at6073 | Complete | 267.7 | 205 | BRAKERHOCP00005013595.1 | probable pyridoxal 5'-phosphate synthase subunit PDX2 | JBrowse |
| 26507at6073 | Complete | 319.1 | 219 | BRAKERHOCP00005006460.1 | N-alpha-acetyltransferase 40 | JBrowse |