Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 29182at6073 | Duplicated | 1144.9 | 692 | BRAKERHOCP00005008526.1 | adenylate kinase 7 | JBrowse |
| 29222at6073 | Complete | 99.6 | 94 | BRAKERHOCP00005001989.1 | PCNA-associated factor | JBrowse |
| 29249at6073 | Complete | 275.7 | 359 | BRAKERHOCP00005001442.1 | Transcription factor AP-1 | JBrowse |
| 29298at6073 | Complete | 323.0 | 297 | BRAKERHOCP00005003266.1 | protein mono-ADP-ribosyltransferase PARP16-like | JBrowse |
| 29299at6073 | Complete | 1044.1 | 1087 | BRAKERHOCP00005015475.1 | F-actin-uncapping protein LRRC16A-like | JBrowse |
| 29339at6073 | Fragmented | 765.0 | 170 | BRAKERHOCP00005006956.1 | zinc finger protein 2-like | JBrowse |
| 29365at6073 | Complete | 623.9 | 770 | BRAKERHOCP00005018963.1 | uncharacterized protein LOC110065606 isoform X1 | JBrowse |
| 29405at6073 | Complete | 911.5 | 910 | BRAKERHOCP00005009227.1 | papilin-like | JBrowse |
| 29408at6073 | Complete | 669.6 | 363 | BRAKERHOCP00005013703.1 | ethanolamine-phosphate cytidylyltransferase | JBrowse |
| 29454at6073 | Complete | 274.8 | 145 | BRAKERHOCP00005017265.1 | UPF0047 protein YjbQ-like | JBrowse |
| 29470at6073 | Complete | 1035.2 | 661 | BRAKERHOCP00005016298.1 | NADPH--cytochrome P450 reductase | JBrowse |
| 29488at6073 | Complete | 368.4 | 338 | BRAKERHOCP00005007408.1 | WD repeat-containing protein 74 | JBrowse |
| 29501at6073 | Fragmented | 211.0 | 194 | BRAKERHOCP00005013957.1 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JBrowse |
| 29565at6073 | Complete | 499.2 | 327 | BRAKERHOCP00005005542.1 | uncharacterized protein LOC113676428 isoform X1 | JBrowse |
| 29583at6073 | Fragmented | 661.4 | 422 | BRAKERHOCP00005011845.1 | heterogeneous nuclear ribonucleoprotein L-like | JBrowse |
| 29587at6073 | Complete | 1012.3 | 688 | BRAKERHOCP00005011762.1 | putative E3 ubiquitin-protein ligase UNKL | JBrowse |
| 29590at6073 | Complete | 236.4 | 183 | BRAKERHOCP00005002775.1 | Golgi SNAP receptor complex member 2 | JBrowse |
| 29631at6073 | Complete | 184.0 | 320 | BRAKERHOCP00005006311.1 | keratin-associated protein 16-1 | JBrowse |
| 29640at6073 | Complete | 450.4 | 341 | BRAKERHOCP00005008301.1 | FERM domain-containing protein 8 | JBrowse |
| 29671at6073 | Complete | 536.9 | 251 | BRAKERHOCP00005010630.1 | small ribosomal subunit protein uS5 | JBrowse |