BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1182at6073Duplicated889.5444.0g109.t1.1Serine/threonine-protein kinase 38JBrowse
1219at6073Duplicated655.1361.0BRAKERKREP00000023996.1COUP transcription factor 2-likeJBrowse
1219at6073Duplicated655.1361.0g6414.t1.1COUP transcription factor 2-likeJBrowse
1240at6073Duplicated454.8445.0BRAKERKREP00000005443.1uncharacterized protein LOC110041196 isoform X1JBrowse
1240at6073Duplicated454.8445.0g12306.t1.1uncharacterized protein LOC110041196 isoform X1JBrowse
1244at6073Duplicated566.8354.0BRAKERKREP00000003659.1DENN domain-containing protein 11-likeJBrowse
1244at6073Duplicated566.8354.0g10654.t1.1DENN domain-containing protein 11-likeJBrowse
1254at6073Duplicated164.5160.0BRAKERKREP00000003615.1succinate dehydrogenase JBrowse
1254at6073Duplicated164.5160.0g10724.t1.1succinate dehydrogenase JBrowse
1267at6073Duplicated794.0409.026659_t.1histone acetyltransferase KAT8-likeJBrowse
1267at6073Duplicated794.0409.0BRAKERKREP00000026888.1histone acetyltransferase KAT8-likeJBrowse
1267at6073Duplicated793.7401.0BRAKERKREP00000026891.1histone acetyltransferase KAT8-likeJBrowse
1267at6073Duplicated793.7401.0g24866.t1.1histone acetyltransferase KAT8-likeJBrowse
1341at6073Duplicated467.6216.0BRAKERKREP00000000007.1Ras-related protein Rab-14JBrowse
1341at6073Duplicated467.6216.0g93.t1.1Ras-related protein Rab-14JBrowse
1342at6073Fragmented185.4113.0BRAKERKREP00000012426.1protein N-terminal glutamine amidohydrolaseJBrowse
1358at6073Duplicated744.9350.0BRAKERKREP00000009270.1actin-related protein 2JBrowse
1358at6073Duplicated744.9350.0g6798.t1.1actin-related protein 2JBrowse
1360at6073Duplicated200.7134.0BRAKERKREP00000001396.1NTF2-related export protein 1JBrowse
1360at6073Duplicated200.7134.0g3665.t1.1NTF2-related export protein 1JBrowse
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