BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1118at6073Duplicated401.0286.0BRAKERIOWP00000005686.1embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-likeJBrowse
1118at6073Duplicated401.0286.0g5279.t1.1embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-likeJBrowse
1118at6073Duplicated401.0286.0g5279.t2.1embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-likeJBrowse
1137at6073Duplicated427.4297.022996_t.1Dual specificity protein phosphatase 10JBrowse
1137at6073Duplicated427.4297.0BRAKERIOWP00000010068.1Dual specificity protein phosphatase 10JBrowse
1137at6073Duplicated427.4297.0BRAKERIOWP00000010070.1Dual specificity protein phosphatase 10JBrowse
1137at6073Duplicated427.4297.0g13324.t1.1Dual specificity protein phosphatase 10JBrowse
1154at6073Duplicated174.5144.0BRAKERIOWP00000007954.1Transmembrane protein 72JBrowse
1154at6073Duplicated174.5144.0g6258.t1.1Transmembrane protein 72JBrowse
1182at6073Duplicated885.8448.0BRAKERIOWP00000008187.1Serine/threonine-protein kinase 38JBrowse
1182at6073Duplicated885.8448.0g1518.t1.1Serine/threonine-protein kinase 38JBrowse
1219at6073Duplicated668.1356.0BRAKERIOWP00000005206.1COUP transcription factor 2-likeJBrowse
1219at6073Duplicated668.1356.0g20509.t1.1COUP transcription factor 2-likeJBrowse
1240at6073Duplicated384.4404.0BRAKERIOWP00000008623.1uncharacterized protein LOC110041196 isoform X1JBrowse
1240at6073Duplicated384.4404.0g15786.t1.1uncharacterized protein LOC110041196 isoform X1JBrowse
1244at6073Duplicated580.3353.0BRAKERIOWP00000006271.1DENN domain-containing protein 11-likeJBrowse
1244at6073Duplicated580.3353.0g12404.t1.1DENN domain-containing protein 11-likeJBrowse
1254at6073Duplicated168.0145.0BRAKERIOWP00000011944.1succinate dehydrogenase JBrowse
1254at6073Duplicated168.0145.0g5808.t1.1succinate dehydrogenase JBrowse
1267at6073Duplicated785.3415.0BRAKERIOWP00000001004.1histone acetyltransferase KAT8-likeJBrowse
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