Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 33814at6073 | Complete | 540.0 | 419 | BRAKERHOCP00005017756.1 | major facilitator superfamily domain-containing protein 10 | JBrowse |
| 33843at6073 | Fragmented | 165.7 | 215 | BRAKERHOCP00005001267.1 | zinc finger CCCH domain-containing protein 14 | JBrowse |
| 33880at6073 | Complete | 1064.9 | 598 | BRAKERHOCP00005014667.1 | NEDD4-like E3 ubiquitin-protein ligase WWP1 | JBrowse |
| 33906at6073 | Complete | 406.8 | 540 | BRAKERHOCP00005020700.1 | ribosomal RNA processing protein 1 homolog A | JBrowse |
| 33923at6073 | Complete | 1160.3 | 923 | BRAKERHOCP00005020308.1 | U2 snRNP-associated SURP motif-containing protein | JBrowse |
| 33943at6073 | Duplicated | 782.6 | 525 | BRAKERHOCP00005016075.1 | Solute carrier family 28 member 3 | JBrowse |
| 33943at6073 | Duplicated | 859.9 | 517 | BRAKERHOCP00005014891.1 | Solute carrier family 28 member 3 | JBrowse |
| 33963at6073 | Fragmented | 176.3 | 194 | BRAKERHOCP00005016491.1 | myc proto-oncogene protein-like | JBrowse |
| 34040at6073 | Complete | 389.3 | 358 | BRAKERHOCP00005008087.1 | protein FAM98A-like | JBrowse |
| 34066at6073 | Complete | 281.5 | 350 | BRAKERHOCP00005006832.1 | Peptidase S1, PA clan | JBrowse |
| 34084at6073 | Complete | 436.2 | 295 | BRAKERHOCP00005006315.1 | CCR4-NOT transcription complex subunit 2 | JBrowse |
| 34174at6073 | Complete | 461.3 | 324 | BRAKERHOCP00005016627.1 | serine protease HTRA2, mitochondrial-like | JBrowse |
| 34220at6073 | Fragmented | 144.9 | 92 | BRAKERHOCP00005012855.1 | Vesicle-associated membrane protein 4 | JBrowse |
| 34240at6073 | Complete | 653.8 | 654 | BRAKERHOCP00005003977.1 | uncharacterized protein LOC116294835 | JBrowse |
| 34336at6073 | Complete | 766.5 | 645 | BRAKERHOCP00005017745.1 | transcription elongation regulator 1 | JBrowse |
| 34361at6073 | Complete | 1016.2 | 1516 | BRAKERHOCP00005015171.1 | AT-rich interactive domain-containing protein 1B-like | JBrowse |
| 34369at6073 | Fragmented | 281.7 | 228 | BRAKERHOCP00005000576.1 | tubulinyl-Tyr carboxypeptidase 2 | JBrowse |
| 34425at6073 | Complete | 608.8 | 412 | BRAKERHOCP00005005629.1 | glutamate-rich WD repeat-containing protein 1 | JBrowse |
| 34429at6073 | Complete | 194.7 | 154 | BRAKERHOCP00005010089.1 | Ribosomal protein | JBrowse |
| 34506at6073 | Complete | 305.0 | 242 | BRAKERHOCP00005000362.1 | inhibitor of growth protein 1 | JBrowse |