BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2633at6073Complete1123.9645BRAKERKREP00000000038.1Cleavage stimulation factor subunit 3JBrowse
2655at6073Complete239.4160BRAKERKREP00000004687.1protein CFAP276JBrowse
2680at6073Complete427.9191BRAKERKREP00000005142.1Cilia- and flagella-associated protein 20JBrowse
2694at6073Complete265.9128BRAKERKREP00000019799.1Large ribosomal subunit protein eL40 domainJBrowse
2715at6073Complete374.8165BRAKERKREP00000012029.1ras-related protein Rab-2JBrowse
2721at6073Complete1777.4943BRAKERKREP00000003931.1glycine dehydrogenase (decarboxylating), mitochondrialJBrowse
2729at6073Complete1022.8565BRAKERKREP00000001215.1kelch-like protein 5JBrowse
2733at6073Complete425.4314BRAKERKREP00000026562.1queuosine salvage proteinJBrowse
2778at6073Complete521.0279BRAKERKREP00000018448.1cyclin-C-likeJBrowse
2807at6073Fragmented392.9224BRAKERKREP00000000969.1Protein yif1bJBrowse
2813at6073Complete220.2154BRAKERKREP00000013628.1NADH dehydrogenaseJBrowse
2837at6073Complete453.3294BRAKERKREP00000003733.1epimerase family protein SDR39U1-likeJBrowse
2853at6073Complete803.6481BRAKERKREP00000000861.1WD repeat-containing protein 20JBrowse
2886at6073Complete150.1122BRAKERKREP00000001332.1protein LTO1 homologJBrowse
2913at6073Complete390.7241BRAKERKREP00000024993.1homeobox protein SIX1JBrowse
2934at6073Complete1319.9612BRAKERKREP00000010129.1V-type proton ATPase catalytic subunit AJBrowse
2987at6073Complete1542.2954BRAKERKREP00000004220.1Vacuolar protein sorting-associated protein 18JBrowse
2993at6073Complete868.2539BRAKERKREP00000002718.1protein REDUCED WALL ACETYLATION 1JBrowse
3019at6073Complete296.0207BRAKERKREP00000024241.1cilia- and flagella-associated protein 107-likeJBrowse
3025at6073Complete412.9219BRAKERKREP00000008471.1proteasome subunit beta type-1-AJBrowse
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