BUSCO Gene Details in Orbicella faveolata

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Orbicella faveolataBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 89.6% [S: 72.7%, D: 16.8%] F: 8.5%, M: 1.9%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,869 (89.6%)2,330 (72.7%)539 (16.8%)273 (8.5%)61 (1.9%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

BUSCO hits recorded for Orbicella faveolata: 3,961 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1660at6073Fragmented170.789.0XP_020624657.1ubiquitin-like-conjugating enzyme ATG10JBrowse
1672at6073Complete1784.7850.0XP_020630124.1DNA topoisomerase 3-beta-1JBrowse
1705at6073Complete221.1137.0XP_020627687.1Selenoprotein F/MJBrowse
1748at6073Complete521.0250.0XP_020626386.1Succinate dehydrogenase JBrowse
1757at6073Complete1036.8537.0XP_020612987.1frizzled-1-likeJBrowse
1790at6073Complete314.6222.0XP_020602977.1short stature homeobox proteinJBrowse
1838at6073Duplicated378.6194.0XP_020630509.1SPRY domain-containing protein 7JBrowse
1838at6073Duplicated356.8194.0XP_020630501.1SPRY domain-containing protein 7JBrowse
1859at6073Complete277.1166.0XP_020621746.1uncharacterized protein C16orf52 homologJBrowse
1880at6073Complete888.0464.0XP_020618908.1GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferaseJBrowse
1920at6073Complete577.3292.0XP_020603011.1kidney mitochondrial carrier protein 1JBrowse
1944at6073Complete715.8342.0XP_020632005.1mitogen-activated protein kinase 14JBrowse
1962at6073Complete159.591.0XP_020621087.1SH3 domain-binding glutamic acid-rich 3JBrowse
2020at6073Fragmented250.2136.0XP_020611171.1DNA replication complex GINS protein PSF3-likeJBrowse
2036at6073Complete200.991.0XP_020601956.1small nuclear ribonucleoprotein EJBrowse
2051at6073Complete975.5560.0XP_020618168.1Fucose-1-phosphate guanylyltransferaseJBrowse
2052at6073Complete369.5198.0XP_020612027.1mitochondrial inner membrane protease ATP23JBrowse
2062at6073Complete499.4309.0XP_020630583.1transcription factor Sox-3JBrowse
2093at6073Complete852.9476.0XP_020627373.1protein O-glucosyltransferase 2JBrowse
2095at6073Duplicated1283.3611.0XP_020612821.1bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthaseJBrowse
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