BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1267at6073Duplicated785.3415.0g11077.t1.1histone acetyltransferase KAT8-likeJBrowse
1341at6073Duplicated471.6216.0BRAKERIOWP00000012091.1Ras-related protein Rab-14JBrowse
1341at6073Duplicated471.6216.0g6470.t1.1Ras-related protein Rab-14JBrowse
1342at6073Duplicated226.2174.0BRAKERIOWP00000006026.1protein N-terminal glutamine amidohydrolaseJBrowse
1342at6073Duplicated226.2174.0g10927.t1.1protein N-terminal glutamine amidohydrolaseJBrowse
1358at6073Duplicated852.5377.0BRAKERIOWP00000003962.1actin-related protein 2JBrowse
1358at6073Duplicated852.5377.0g16090.t1.1actin-related protein 2JBrowse
1360at6073Duplicated192.7131.0BRAKERIOWP00000006042.1NTF2-related export protein 1JBrowse
1360at6073Duplicated192.7131.0g7506.t1.1NTF2-related export protein 1JBrowse
1361at6073Duplicated469.0312.0BRAKERIOWP00000016374.1potassium channel subfamily K member 9JBrowse
1361at6073Duplicated469.0312.0g14470.t1.1potassium channel subfamily K member 9JBrowse
1370at6073Fragmented422.3207.0BRAKERIOWP00000011796.1homeobox protein six1-likeJBrowse
1411at6073Duplicated384.9301.0BRAKERIOWP00000002367.11-acyl-sn-glycerol-3-phosphate acyltransferase epsilonJBrowse
1411at6073Duplicated384.9301.0g6397.t1.11-acyl-sn-glycerol-3-phosphate acyltransferase epsilonJBrowse
1419at6073Duplicated638.2316.0BRAKERIOWP00000021234.1protein arginine N-methyltransferase 1JBrowse
1419at6073Duplicated638.2316.0g14880.t1.1protein arginine N-methyltransferase 1JBrowse
1422at6073Duplicated1207.6604.0BRAKERIOWP00000008669.1Integrator complex subunit 11JBrowse
1422at6073Duplicated1207.6604.0g10285.t1.1Integrator complex subunit 11JBrowse
1440at6073Duplicated337.4236.0BRAKERIOWP00000005700.1cyanocobalamin reductase / alkylcobalamin dealkylaseJBrowse
1440at6073Duplicated337.4236.0g10180.t1.1cyanocobalamin reductase / alkylcobalamin dealkylaseJBrowse
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