BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1491at6073Duplicated517.1325.0BRAKERKREP00000018217.1cell cycle control protein 50A-likeJBrowse
1491at6073Duplicated517.1325.0g7631.t1.1cell cycle control protein 50A-likeJBrowse
1580at6073Duplicated414.8298.0BRAKERKREP00000002814.1dual specificity mitogen-activated protein kinase kinase 4JBrowse
1580at6073Duplicated414.8298.0g15270.t1.1dual specificity mitogen-activated protein kinase kinase 4JBrowse
1599at6073Duplicated542.3336.0BRAKERKREP00000002087.1WD repeat domain phosphoinositide-interacting protein 4JBrowse
1599at6073Duplicated542.3336.0g2107.t1.1WD repeat domain phosphoinositide-interacting protein 4JBrowse
1619at6073Duplicated216.6113.0BRAKERKREP00000009710.1transcription elongation factor SPT4JBrowse
1619at6073Duplicated216.6113.0g8621.t1.1transcription elongation factor SPT4JBrowse
1622at6073Duplicated689.1417.0BRAKERKREP00000015365.1mannose-1-phosphate guanyltransferase alphaJBrowse
1622at6073Duplicated689.1417.0g13674.t1.1mannose-1-phosphate guanyltransferase alphaJBrowse
1622at6073Duplicated685.2417.0BRAKERKREP00000015364.1mannose-1-phosphate guanyltransferase alphaJBrowse
1622at6073Duplicated685.2417.0g13674.t2.1mannose-1-phosphate guanyltransferase alphaJBrowse
1627at6073Duplicated283.5250.0BRAKERKREP00000010417.1tubulin polyglutamylase complex subunit 2JBrowse
1627at6073Duplicated283.5250.0g15843.t1.1tubulin polyglutamylase complex subunit 2JBrowse
1630at6073Duplicated419.3357.0BRAKERKREP00000002628.1DNA excision repair protein ERCC-8JBrowse
1630at6073Duplicated419.3357.0g4910.t1.1DNA excision repair protein ERCC-8JBrowse
1672at6073Duplicated1490.0813.0BRAKERKREP00000016333.1DNA topoisomerase 3-beta-1JBrowse
1672at6073Duplicated1490.0813.0g22815.t1.1DNA topoisomerase 3-beta-1JBrowse
1705at6073Duplicated145.2116.0BRAKERKREP00000000054.1Selenoprotein F/MJBrowse
1705at6073Duplicated145.2116.0g39.t1.1Selenoprotein F/MJBrowse
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