BUSCO Gene Details in Orbicella faveolata

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Orbicella faveolataBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 89.6% [S: 72.7%, D: 16.8%] F: 8.5%, M: 1.9%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,869 (89.6%)2,330 (72.7%)539 (16.8%)273 (8.5%)61 (1.9%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

BUSCO hits recorded for Orbicella faveolata: 3,961 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2095at6073Duplicated1284.9610.0XP_020612820.1bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthaseJBrowse
2197at6073Complete542.5312.0XP_020622790.1protein FAM228BJBrowse
2201at6073Duplicated922.0457.0XP_020619121.1vesicular glutamate transporter 2JBrowse
2201at6073Duplicated950.1442.0XP_020603700.1vesicular glutamate transporter 2JBrowse
2225at6073Duplicated359.9193.0XP_020613485.1protein Hikeshi-likeJBrowse
2225at6073Duplicated342.5190.0XP_020613484.1protein Hikeshi-likeJBrowse
2251at6073Complete400.6249.0XP_020604877.1protein AMN1 homologJBrowse
2255at6073Complete1278.5578.0XP_020627382.1Kelch repeat type 1JBrowse
2262at6073Duplicated318.2145.0XP_020616984.1Retinal rod rhodopsin-sensitive cGMP 3, 5 -cyclic phosphodiesterase subunit deltaJBrowse
2262at6073Duplicated318.2145.0XP_020617018.1Retinal rod rhodopsin-sensitive cGMP 3, 5 -cyclic phosphodiesterase subunit deltaJBrowse
2262at6073Duplicated318.2145.0XP_020617019.1Retinal rod rhodopsin-sensitive cGMP 3, 5 -cyclic phosphodiesterase subunit deltaJBrowse
2281at6073Complete274.0178.0XP_020628277.1Dynein heavy chain AAA lid domainJBrowse
2297at6073Complete944.3430.0XP_020609557.1adenosylhomocysteinase AJBrowse
2305at6073Complete499.9241.0XP_020616317.1vacuolar-sorting protein SNF8JBrowse
2333at6073Complete742.0425.0XP_020629461.1carbohydrate sulfotransferase 1JBrowse
2340at6073Complete584.2309.0XP_020626263.1Endoplasmic reticulum-Golgi intermediate compartment protein 2JBrowse
2378at6073Complete237.0105.0XP_020616790.1RING-box protein 1JBrowse
2385at6073Duplicated485.6282.0XP_020625665.1polyhomeotic-like protein 2JBrowse
2385at6073Duplicated413.0244.0XP_020625666.1polyhomeotic-like protein 2JBrowse
2419at6073Complete207.8124.0XP_020617084.1nuclear transport factor 2JBrowse
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