BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1484at6073Duplicated424.7217.0BRAKERIOWP00000002369.1cleavage and polyadenylation specificity factor subunit 5JBrowse
1484at6073Duplicated424.7217.0g6389.t1.1cleavage and polyadenylation specificity factor subunit 5JBrowse
1491at6073Fragmented253.9165.0BRAKERIOWP00000010247.1cell cycle control protein 50A-likeJBrowse
1580at6073Duplicated587.5345.0BRAKERIOWP00000008916.1dual specificity mitogen-activated protein kinase kinase 4JBrowse
1580at6073Duplicated587.5345.0g2832.t1.1dual specificity mitogen-activated protein kinase kinase 4JBrowse
1599at6073Duplicated560.2337.0BRAKERIOWP00000004400.1WD repeat domain phosphoinositide-interacting protein 4JBrowse
1599at6073Duplicated560.2337.0g15322.t1.1WD repeat domain phosphoinositide-interacting protein 4JBrowse
1619at6073Duplicated217.4113.0BRAKERIOWP00000012523.1transcription elongation factor SPT4JBrowse
1619at6073Duplicated217.4113.0g3964.t1.1transcription elongation factor SPT4JBrowse
1622at6073Duplicated613.8387.0BRAKERIOWP00000020615.1mannose-1-phosphate guanyltransferase alphaJBrowse
1622at6073Duplicated613.8387.0g3594.t1.1mannose-1-phosphate guanyltransferase alphaJBrowse
1627at6073Duplicated287.8261.0BRAKERIOWP00000014954.1tubulin polyglutamylase complex subunit 2JBrowse
1627at6073Duplicated287.8261.0g10751.t1.1tubulin polyglutamylase complex subunit 2JBrowse
1630at6073Fragmented212.9190.0BRAKERIOWP00000001503.1DNA excision repair protein ERCC-8JBrowse
1660at6073Duplicated197.3199.0BRAKERIOWP00000012036.1ubiquitin-like-conjugating enzyme ATG10JBrowse
1660at6073Duplicated197.3199.0g18937.t1.1ubiquitin-like-conjugating enzyme ATG10JBrowse
1672at6073Duplicated1521.6839.0BRAKERIOWP00000010943.1DNA topoisomerase 3-beta-1JBrowse
1672at6073Duplicated1521.6839.0g6946.t1.1DNA topoisomerase 3-beta-1JBrowse
1705at6073Duplicated163.4133.0BRAKERIOWP00000016305.1Selenoprotein F/MJBrowse
1705at6073Duplicated163.4133.0g5935.t1.1Selenoprotein F/MJBrowse
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