BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
1748at6073Duplicated503.5244.0BRAKERKREP00000008203.1Succinate dehydrogenase JBrowse
1748at6073Duplicated503.5244.0g3521.t1.1Succinate dehydrogenase JBrowse
1757at6073Duplicated854.0530.0BRAKERKREP00000008347.1frizzled-1-likeJBrowse
1757at6073Duplicated854.0530.0g22609.t1.1frizzled-1-likeJBrowse
1838at6073Duplicated247.6164.0BRAKERKREP00000015571.1SPRY domain-containing protein 7JBrowse
1838at6073Duplicated247.6164.0g8070.t1.1SPRY domain-containing protein 7JBrowse
1880at6073Duplicated759.5459.0BRAKERKREP00000013862.1GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferaseJBrowse
1880at6073Duplicated759.5459.0g2730.t1.1GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferaseJBrowse
1920at6073Duplicated466.9278.0BRAKERKREP00000008977.1kidney mitochondrial carrier protein 1JBrowse
1920at6073Duplicated466.9278.0g21764.t1.1kidney mitochondrial carrier protein 1JBrowse
1962at6073Fragmented92.367.0BRAKERKREP00000008935.1SH3 domain-binding glutamic acid-rich 3JBrowse
2020at6073Duplicated327.7204.0BRAKERKREP00000009668.1DNA replication complex GINS protein PSF3-likeJBrowse
2020at6073Duplicated327.7204.0g8620.t1.1DNA replication complex GINS protein PSF3-likeJBrowse
2051at6073Duplicated779.6552.0BRAKERKREP00000000982.1Fucose-1-phosphate guanylyltransferaseJBrowse
2051at6073Duplicated779.6552.0g22423.t1.1Fucose-1-phosphate guanylyltransferaseJBrowse
2052at6073Duplicated308.1194.0BRAKERKREP00000010796.1mitochondrial inner membrane protease ATP23JBrowse
2052at6073Duplicated308.1194.0g5953.t1.1mitochondrial inner membrane protease ATP23JBrowse
2052at6073Duplicated307.2194.034592_t.1mitochondrial inner membrane protease ATP23JBrowse
2052at6073Duplicated307.2194.0BRAKERKREP00000010760.1mitochondrial inner membrane protease ATP23JBrowse
2062at6073Duplicated279.2308.0BRAKERKREP00000009993.1transcription factor Sox-3JBrowse
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