BUSCO Gene Details in Montipora cactus

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Montipora cactusBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 74.1% [S: 70.8%, D: 3.3%] F: 15.7%, M: 10.1%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,375 (74.1%)2,268 (70.8%)107 (3.3%)504 (15.7%)324 (10.1%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Montipora cactus: 2,989 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3797at6073Fragmented354.8220BRAKERNUSP00000012728.1mitochondrial thiamine pyrophosphate carrier-likeJBrowse
3805at6073Fragmented393.2226BRAKERNUSP00000009737.1nucleic acid dioxygenase ALKBH1-likeJBrowse
3818at6073Complete862.4468BRAKERNUSP00000023888.1F-box/LRR-repeat protein 20JBrowse
3848at6073Complete872.3421BRAKERNUSP00000041976.15-aminolevulinate synthase, nonspecific, mitochondrial-likeJBrowse
3897at6073Complete504.6341BRAKERNUSP00000022350.1tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4JBrowse
3911at6073Complete1134.1641BRAKERNUSP00000052529.1Gamma-tubulin complex component 4JBrowse
4064at6073Complete848.8494BRAKERNUSP00000039577.1T-box transcription factor TBX3-likeJBrowse
4079at6073Complete309.2228BRAKERNUSP00000021573.1sorting nexin-10B-likeJBrowse
4090at6073Complete307.2225BRAKERNUSP00000011076.1noggin-likeJBrowse
4117at6073Fragmented337.5159BRAKERNUSP00000000767.1ras-related protein Rab-5B-likeJBrowse
4122at6073Complete366.8179BRAKERNUSP00000033327.1Trafficking protein particle complex subunit 3JBrowse
4138at6073Complete910.2426BRAKERNUSP00000017094.1isocitrate dehydrogenaseJBrowse
4148at6073Complete718.6484BRAKERNUSP00000041683.1sphingosine kinase 2-likeJBrowse
4192at6073Fragmented426.8272BRAKERNUSP00000006382.1Prolyl 3-hydroxylase 2JBrowse
4196at6073Complete1237.7692BRAKERNUSP00000032797.1NHL repeat-containing protein 2JBrowse
4265at6073Complete640.2387BRAKERNUSP00000011885.1tRNA (guanine(10)-N2)-methyltransferaseJBrowse
4273at6073Complete792.3716BRAKERNUSP00000026195.1uncharacterized protein LOC124453041 isoform X1JBrowse
4317at6073Complete2298.21094BRAKERNUSP00000033600.1methionine synthaseJBrowse
4319at6073Complete710.3446BRAKERNUSP00000010103.1meiosis-specific with OB domain-containing proteinJBrowse
4355at6073Complete859.5429BRAKERNUSP00000022983.1actin-like protein 6BJBrowse
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