BUSCO Gene Details in Orbicella faveolata

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Orbicella faveolataBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 89.6% [S: 72.7%, D: 16.8%] F: 8.5%, M: 1.9%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,869 (89.6%)2,330 (72.7%)539 (16.8%)273 (8.5%)61 (1.9%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

BUSCO hits recorded for Orbicella faveolata: 3,961 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2813at6073Complete273.7165.0XP_020612301.1NADH dehydrogenase JBrowse
2837at6073Complete543.7294.0XP_020602819.1epimerase family protein SDR39U1-likeJBrowse
2841at6073Complete717.6449.0XP_020627799.1F-box/LRR-repeat protein 2-likeJBrowse
2853at6073Duplicated929.7482.0XP_020618327.1WD repeat-containing protein 20JBrowse
2853at6073Duplicated925.7479.0XP_020618328.1WD repeat-containing protein 20JBrowse
2867at6073Duplicated2436.31380.0XP_020624242.1uncharacterized protein LOC113684304 isoform X1JBrowse
2867at6073Duplicated2435.81380.0XP_020624234.1uncharacterized protein LOC113684304 isoform X1JBrowse
2886at6073Duplicated195.7129.0XP_020601935.1protein LTO1 homologJBrowse
2886at6073Duplicated179.1120.0XP_020601934.1protein LTO1 homologJBrowse
2913at6073Complete489.7263.0XP_020605711.1homeobox protein SIX1JBrowse
2934at6073Complete1112.4495.0XP_020609649.1V-type proton ATPase catalytic subunit AJBrowse
2987at6073Fragmented1426.2734.0XP_020612562.1Vacuolar protein sorting-associated protein 18JBrowse
2993at6073Complete1020.0541.0XP_020627978.1protein REDUCED WALL ACETYLATION 1JBrowse
3019at6073Complete402.4211.0XP_020626327.1cilia- and flagella-associated protein 107-likeJBrowse
3025at6073Complete469.2220.0XP_020625121.1proteasome subunit beta type-1-AJBrowse
3028at6073Fragmented121.275.0XP_020611986.1replication protein A 14 kDa subunit-likeJBrowse
3034at6073Complete717.9346.0XP_020600827.1galactose-1-phosphate uridylyltransferase-likeJBrowse
3047at6073Complete894.3288.0XP_020629944.1F-box/LRR-repeat protein 15JBrowse
3050at6073Fragmented224.1170.0XP_020620753.1Peroxisomal biogenesis factor 3JBrowse
3060at6073Complete762.9464.0XP_020601390.1pyruvate dehydrogenase JBrowse
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