BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2093at6073Duplicated830.3486.0BRAKERIOWP00000009148.1protein O-glucosyltransferase 2JBrowse
2093at6073Duplicated830.3486.0g9692.t1.1protein O-glucosyltransferase 2JBrowse
2095at6073Duplicated1181.8608.0BRAKERIOWP00000001388.1bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthaseJBrowse
2095at6073Duplicated1181.8608.0g5888.t1.1bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthaseJBrowse
2197at6073Duplicated342.7261.0BRAKERIOWP00000011249.1protein FAM228BJBrowse
2197at6073Duplicated342.7261.0g19265.t1.1protein FAM228BJBrowse
2201at6073Duplicated831.6453.0BRAKERIOWP00000003433.1vesicular glutamate transporter 2JBrowse
2201at6073Duplicated831.6453.0g4907.t1.1vesicular glutamate transporter 2JBrowse
2281at6073Duplicated171.8172.0BRAKERIOWP00000000881.1Dynein heavy chain AAA lid domainJBrowse
2281at6073Duplicated171.8172.0g1752.t1.1Dynein heavy chain AAA lid domainJBrowse
2297at6073Duplicated893.8430.0BRAKERIOWP00000013211.1adenosylhomocysteinase AJBrowse
2297at6073Duplicated893.8430.0g19614.t1.1adenosylhomocysteinase AJBrowse
2305at6073Duplicated429.5241.0BRAKERIOWP00000019027.1vacuolar-sorting protein SNF8JBrowse
2305at6073Duplicated429.5241.0g15691.t1.1vacuolar-sorting protein SNF8JBrowse
2333at6073Duplicated638.7417.0BRAKERIOWP00000007138.1carbohydrate sulfotransferase 1JBrowse
2333at6073Duplicated638.7417.0g6497.t1.1carbohydrate sulfotransferase 1JBrowse
2340at6073Duplicated615.5376.0BRAKERIOWP00000016206.1Endoplasmic reticulum-Golgi intermediate compartment protein 2JBrowse
2340at6073Duplicated615.5376.0g10952.t1.1Endoplasmic reticulum-Golgi intermediate compartment protein 2JBrowse
2378at6073Duplicated222.5105.0BRAKERIOWP00000009473.1RING-box protein 1JBrowse
2378at6073Duplicated222.5105.0g5850.t1.1RING-box protein 1JBrowse
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