BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
63at6073Duplicated578.6365.0BRAKERKREP00000001269.1testin-likeJBrowse
63at6073Duplicated578.6365.0g3613.t1.1testin-likeJBrowse
149at6073Duplicated422.3215.0BRAKERKREP00000017598.1cytochrome b5 domain-containing protein 1JBrowse
149at6073Duplicated422.3215.0g17954.t1.1cytochrome b5 domain-containing protein 1JBrowse
207at6073Duplicated530.0333.0BRAKERKREP00000003553.1fatty acid 2-hydroxylaseJBrowse
207at6073Duplicated530.0333.0g10670.t1.1fatty acid 2-hydroxylaseJBrowse
207at6073Duplicated465.6333.0BRAKERKREP00000003647.1fatty acid 2-hydroxylaseJBrowse
207at6073Duplicated465.6333.0g10671.t1.1fatty acid 2-hydroxylaseJBrowse
227at6073Duplicated683.6313.0BRAKERKREP00000017343.1guanine nucleotide-binding protein subunit beta-2-like 1JBrowse
227at6073Duplicated683.6313.0g3194.t1.1guanine nucleotide-binding protein subunit beta-2-like 1JBrowse
232at6073Duplicated493.7334.0BRAKERKREP00000018019.1zinc finger protein ZIC 4JBrowse
232at6073Duplicated493.7334.0g24470.t1.1zinc finger protein ZIC 4JBrowse
302at6073Duplicated776.1304.0BRAKERKREP00000006117.1vesicular integral-membrane protein VIP36-likeJBrowse
302at6073Duplicated776.1304.0g9218.t1.1vesicular integral-membrane protein VIP36-likeJBrowse
314at6073Duplicated185.699.0BRAKERKREP00000007139.1enhancer of rudimentary homologJBrowse
314at6073Duplicated185.699.0g1060.t1.1enhancer of rudimentary homologJBrowse
321at6073Duplicated308.5179.0BRAKERKREP00000009703.1vacuolar protein-sorting-associated protein 25JBrowse
321at6073Duplicated308.5179.0g8651.t1.1vacuolar protein-sorting-associated protein 25JBrowse
369at6073Duplicated445.6211.0BRAKERKREP00000010150.160S ribosomal protein L10-like proteinJBrowse
369at6073Duplicated445.6211.0g13952.t1.160S ribosomal protein L10-like proteinJBrowse
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