BUSCO Gene Details

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
63at6073Duplicated598.7365.0BRAKERIOWP00000007933.1testin-likeJBrowse
63at6073Duplicated598.7365.0g5218.t2.1testin-likeJBrowse
63at6073Duplicated599.0364.0BRAKERIOWP00000007932.1testin-likeJBrowse
63at6073Duplicated599.0364.0g5218.t1.1testin-likeJBrowse
65at6073Duplicated407.9230.0BRAKERIOWP00000014505.1MORN repeat-containing protein 3JBrowse
65at6073Duplicated407.9230.0g11394.t1.1MORN repeat-containing protein 3JBrowse
84at6073Duplicated339.2157.0BRAKERIOWP00000009735.1SUMO-conjugating enzyme UBC9JBrowse
84at6073Duplicated339.2157.0g20816.t1.1SUMO-conjugating enzyme UBC9JBrowse
102at6073Duplicated250.6125.0BRAKERIOWP00000000157.1DNA-directed RNA polymerase II subunit RPB9JBrowse
102at6073Duplicated250.6125.0g2634.t1.1DNA-directed RNA polymerase II subunit RPB9JBrowse
207at6073Duplicated513.1332.0BRAKERIOWP00000007501.1fatty acid 2-hydroxylaseJBrowse
207at6073Duplicated513.1332.0g14968.t1.1fatty acid 2-hydroxylaseJBrowse
227at6073Fragmented313.2180.0BRAKERIOWP00000000111.1guanine nucleotide-binding protein subunit beta-2-like 1JBrowse
232at6073Duplicated490.8351.0BRAKERIOWP00000010178.1zinc finger protein ZIC 4JBrowse
232at6073Duplicated490.8351.0g4395.t1.1zinc finger protein ZIC 4JBrowse
233at6073Fragmented688.0155.0BRAKERIOWP00000003261.1uncharacterized protein LOC116298145JBrowse
302at6073Duplicated499.8316.0BRAKERIOWP00000018570.1vesicular integral-membrane protein VIP36-likeJBrowse
302at6073Duplicated499.8316.0g3841.t1.1vesicular integral-membrane protein VIP36-likeJBrowse
314at6073Duplicated183.799.0BRAKERIOWP00000011333.1enhancer of rudimentary homologJBrowse
314at6073Duplicated183.799.0g8918.t1.1enhancer of rudimentary homologJBrowse
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