Every cell is one point. Drag to pan, scroll to zoom, shift-drag to select a region; click any group in the legend to isolate it. Use Colour cells by to switch between cell type, cluster, library, quality-control metric and the expression of a single gene.
Click a cell type to isolate it in the atlas above.
| Cell type | Cells | Percent | Markers |
|---|---|---|---|
| Cluster 5 | 3,055 | 38.30% | marker genes |
| Cluster 1 | 1,266 | 15.87% | marker genes |
| Cluster 4 | 930 | 11.66% | marker genes |
| Cluster 0 | 506 | 6.34% | marker genes |
| Cluster 2 | 365 | 4.58% | marker genes |
| Cluster 3 | 313 | 3.92% | marker genes |
| Cluster 6 | 290 | 3.64% | marker genes |
| Cluster 7 | 265 | 3.32% | marker genes |
| Cluster 13 | 241 | 3.02% | marker genes |
| Cluster 11 | 167 | 2.09% | marker genes |
| Cluster 8 | 135 | 1.69% | marker genes |
| Cluster 16 | 96 | 1.20% | marker genes |
| Cluster 14 | 73 | 0.92% | marker genes |
| Cluster 9 | 70 | 0.88% | marker genes |
| Cluster 12 | 60 | 0.75% | marker genes |
| Cluster 15 | 46 | 0.58% | marker genes |
| Cluster 17 | 41 | 0.51% | marker genes |
| Cluster 18 | 32 | 0.40% | marker genes |
| Cluster 10 | 26 | 0.33% | marker genes |
These are the figures actually applied to the cells shown above, not the values requested in a configuration file. Every dataset is filtered independently; see Single-cell Data for the full table across all datasets.
