Every cell is one point. Drag to pan, scroll to zoom, shift-drag to select a region; click any group in the legend to isolate it. Use Colour cells by to switch between cell type, cluster, library, quality-control metric and the expression of a single gene.
Click a cell type to isolate it in the atlas above.
| Cell type | Cells | Percent | Markers |
|---|---|---|---|
| gastrodermis | 4,614 | 33.20% | marker genes |
| epidermis | 2,894 | 20.83% | marker genes |
| gastrodermis_alga_hosting | 755 | 5.43% | marker genes |
| gastrodermis_muscle | 663 | 4.77% | marker genes |
| neuron_Isl | 652 | 4.69% | marker genes |
| neuron_Atoh8 | 628 | 4.52% | marker genes |
| calicoblast | 584 | 4.20% | marker genes |
| gastrodermis_like_2 | 436 | 3.14% | marker genes |
| neuron_Pou4_2 | 340 | 2.45% | marker genes |
| gland_2 | 284 | 2.04% | marker genes |
| neurosecretory_progenitors | 232 | 1.67% | marker genes |
| digestive_filaments | 214 | 1.54% | marker genes |
| neuron_Pou4_Otp | 206 | 1.48% | marker genes |
| neuron_Pou4_1 | 190 | 1.37% | marker genes |
| germline_oocytes_1 | 182 | 1.31% | marker genes |
| neuron_Pou4_Gsx | 162 | 1.17% | marker genes |
| immune_3 | 142 | 1.02% | marker genes |
| neuron_Isl_Nkx6 | 136 | 0.98% | marker genes |
| immune_1 | 126 | 0.91% | marker genes |
| gland_1_Xbp | 121 | 0.87% | marker genes |
| gland_3 | 117 | 0.84% | marker genes |
| germline_oocytes_2 | 73 | 0.53% | marker genes |
| immune_4 | 55 | 0.40% | marker genes |
| immune_2 | 52 | 0.37% | marker genes |
| cnidocyte | 38 | 0.27% | marker genes |
These are the figures actually applied to the cells shown above, not the values requested in a configuration file. Every dataset is filtered independently; see Single-cell Data for the full table across all datasets.
