Cell Atlas

Every cell is one point. Drag to pan, scroll to zoom, shift-drag to select a region; click any group in the legend to isolate it. Use Colour cells by to switch between cell type, cluster, library, quality-control metric and the expression of a single gene.

UMAP — this re-analysis

Drawn from the same exported coordinates and labels the interactive atlas above uses, so the figure and the atlas cannot disagree. 13,896 cells.

Coloured by cell type (25)

The legend in the panel names every type and its cell count. With 25 types, colour alone no longer separates them — read the legend, not the hue.

Coloured by Leiden cluster (48)

Each cluster's number is placed at its own centroid, so the grouping can be read without relying on colour. These are the clusters the cell-type annotation was built on.

Cell types in this dataset

Click a cell type to isolate it in the atlas above. The bar beside each percentage is drawn to scale: a cell type at 2.6 % fills 2.6 % of the track, so the rows can be ranked by eye without reading the numbers.

Quality control for this dataset

These are the figures actually applied to the cells shown above, not the values requested in a configuration file. Every dataset is filtered independently; see Single-cell Data for the full table across all datasets.