Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr1.1032 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 24 1 evm.TU.Chr1.1032 3.29 23.6 96.9% feature · violin
Cluster 24 2 evm.TU.Chr9.881 4.44 22.8 91.1% feature · violin
Cluster 24 3 evm.TU.Chr14.342 5.33 22.8 87.0% feature · violin
Cluster 24 4 evm.TU.Chr4.850 6.04 21.5 78.8% feature · violin
Cluster 24 5 evm.TU.Chr3.394 2.82 19.2 91.8% feature · violin
Cluster 24 6 evm.TU.Chr10.1357 3.35 18.7 88.7% feature · violin
Cluster 24 7 evm.TU.Chr4.358 5.64 17.8 65.2% feature · violin
Cluster 24 8 evm.TU.Chr14.732 3.17 17.2 86.3% feature · violin
Cluster 24 9 evm.TU.Chr2.482 4.54 16.9 66.6% feature · violin
Cluster 24 10 evm.TU.Chr5.1205 2.43 16.5 84.3% feature · violin
Cluster 24 11 evm.TU.Chr10.1285 4.07 15.3 61.4% feature · violin
Cluster 24 12 evm.TU.Chr4.579 3.08 15.2 79.9% feature · violin
Cluster 24 13 evm.TU.Chr7.698 3.33 14.8 66.2% feature · violin
Cluster 24 14 evm.TU.Chr13.114 4.67 14.6 55.3% feature · violin
Cluster 24 15 evm.TU.Chr4.722 3.57 14.6 61.4% feature · violin
Cluster 24 16 evm.TU.Chr8.600 4.31 14.6 57.0% feature · violin
Cluster 24 17 evm.TU.Chr8.227 2.38 14.4 88.4% feature · violin
Cluster 24 18 evm.TU.Chr11.510 6.52 14.3 50.5% feature · violin
Cluster 24 19 evm.TU.Chr1.1466 5.16 14.2 52.2% feature · violin
Cluster 24 20 evm.TU.Chr4.2003 5.12 14.0 51.5% feature · violin
Cluster 24 21 evm.TU.Chr2.162 3.14 13.6 59.7% feature · violin
Cluster 24 22 evm.TU.Chr7.711 1.81 13.5 89.4% feature · violin
Cluster 24 23 evm.TU.Chr3.662 2.70 13.3 69.3% feature · violin
Cluster 24 24 evm.TU.Chr8.420 2.11 12.8 73.4% feature · violin
Cluster 24 25 evm.TU.Chr4.1732 2.31 12.7 74.7% feature · violin
Cluster 24 26 evm.TU.Chr1.1203 4.10 12.6 49.1% feature · violin
Cluster 24 27 evm.TU.Chr4.954 2.89 12.6 59.4% feature · violin
Cluster 24 28 evm.TU.Chr8.921 1.75 12.2 79.5% feature · violin
Cluster 24 29 evm.TU.Chr9.1235 1.93 11.9 70.6% feature · violin
Cluster 24 30 evm.TU.Chr10.1473 1.74 11.9 80.9% feature · violin
Cluster 24 31 evm.TU.Chr4.721 3.23 11.1 47.4% feature · violin
Cluster 24 32 evm.TU.Chr12.1296 2.01 11.1 64.2% feature · violin
Cluster 24 33 evm.TU.Chr6.496 2.27 10.9 58.0% feature · violin
Cluster 24 34 evm.TU.Chr3.661 2.51 10.6 55.3% feature · violin
Cluster 24 35 evm.TU.Chr9.1135 2.02 10.6 63.5% feature · violin
Cluster 24 36 evm.TU.Chr8.1383 3.82 10.3 41.0% feature · violin
Cluster 24 37 evm.TU.Chr10.1294 3.94 10.0 38.9% feature · violin
Cluster 24 38 evm.TU.Chr13.813 2.42 9.3 47.1% feature · violin
Cluster 24 39 evm.TU.Chr4.1565 2.23 9.2 48.8% feature · violin
Cluster 24 40 evm.TU.Chr4.1457 3.08 9.2 39.2% feature · violin
Cluster 24 41 evm.TU.Chr13.677 3.68 9.0 35.5% feature · violin
Cluster 24 42 evm.TU.Chr4.772 1.80 8.9 53.9% feature · violin
Cluster 24 43 evm.TU.Chr7.368 3.26 8.7 36.2% feature · violin
Cluster 24 44 evm.TU.Chr4.637 1.62 8.7 71.3% feature · violin
Cluster 24 45 evm.TU.Chr6.930 2.14 8.7 47.1% feature · violin
Cluster 24 46 evm.TU.Chr6.1119 3.43 8.6 34.8% feature · violin
Cluster 24 47 evm.TU.Chr6.602 3.16 8.5 35.5% feature · violin
Cluster 24 48 evm.TU.Chr7.1104 2.42 8.1 39.2% feature · violin
Cluster 24 49 evm.TU.Chr10.1866 2.44 8.1 38.9% feature · violin
Cluster 24 50 evm.TU.Chr4.930_evm.TU.Chr4.931 2.84 7.9 34.8% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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