Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr10.1399 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 evm.TU.Chr7.1122 5.72 14.9 93.3% feature · violin
Cluster 14 2 evm.TU.Chr5.151 4.43 10.1 65.7% feature · violin
Cluster 14 3 evm.TU.Chr9.1140 7.01 10.0 58.1% feature · violin
Cluster 14 4 evm.TU.Chr9.988 8.73 10.0 57.1% feature · violin
Cluster 14 5 evm.TU.Chr9.1590 5.99 9.9 59.0% feature · violin
Cluster 14 6 evm.TU.Chr9.1158 6.41 9.6 56.2% feature · violin
Cluster 14 7 evm.TU.Chr5.691 5.43 8.7 52.4% feature · violin
Cluster 14 8 evm.TU.Chr10.1891 8.56 8.7 49.5% feature · violin
Cluster 14 9 evm.TU.Chr12.415 3.76 8.4 57.1% feature · violin
Cluster 14 10 evm.TU.Chr8.1280 7.58 7.9 45.7% feature · violin
Cluster 14 11 evm.TU.Chr8.1295 3.61 7.7 53.3% feature · violin
Cluster 14 12 evm.TU.Chr5.972 5.63 7.7 45.7% feature · violin
Cluster 14 13 evm.TU.Chr10.1399 2.47 7.7 66.7% feature · violin
Cluster 14 14 evm.TU.Chr2.1119 0.72 7.0 100.0% feature · violin
Cluster 14 15 evm.TU.Chr5.788 5.16 6.8 41.0% feature · violin
Cluster 14 16 evm.TU.Chr3.229 4.94 6.5 39.0% feature · violin
Cluster 14 17 evm.TU.Chr4.874 4.58 6.3 39.0% feature · violin
Cluster 14 18 evm.TU.Chr6.1145 3.52 6.3 42.9% feature · violin
Cluster 14 19 evm.TU.Chr13.718 4.30 6.3 39.0% feature · violin
Cluster 14 20 evm.TU.Chr9.928 7.43 6.0 34.3% feature · violin
Cluster 14 21 evm.TU.Chr4.270 6.79 5.8 33.3% feature · violin
Cluster 14 22 evm.TU.Chr13.739 6.33 5.7 33.3% feature · violin
Cluster 14 23 evm.TU.Chr14.524 2.56 5.6 45.7% feature · violin
Cluster 14 24 evm.TU.Chr11.1170 1.90 5.6 61.9% feature · violin
Cluster 14 25 evm.TU.Chr4.70 4.77 5.5 33.3% feature · violin
Cluster 14 26 evm.TU.Chr10.1509 6.81 5.3 30.5% feature · violin
Cluster 14 27 evm.TU.Chr12.487 5.11 5.3 31.4% feature · violin
Cluster 14 28 evm.TU.Chr4.487 4.56 5.0 30.5% feature · violin
Cluster 14 29 evm.TU.Chr1.1206 2.65 4.9 37.1% feature · violin
Cluster 14 30 evm.TU.Chr6.518 5.56 4.9 28.6% feature · violin
Cluster 14 31 evm.TU.Chr5.138 1.20 4.7 81.0% feature · violin
Cluster 14 32 evm.TU.Chr9.293 2.43 4.7 38.1% feature · violin
Cluster 14 33 evm.TU.Chr8.1598 4.10 4.6 28.6% feature · violin
Cluster 14 34 evm.TU.Chr6.1429 3.44 4.6 30.5% feature · violin
Cluster 14 35 evm.TU.Chr10.1218 1.34 4.6 61.0% feature · violin
Cluster 14 36 evm.TU.Chr9.1497 7.97 4.5 25.7% feature · violin
Cluster 14 37 evm.TU.Chr9.346 2.26 4.5 37.1% feature · violin
Cluster 14 38 evm.TU.Chr13.556 1.62 4.3 47.6% feature · violin
Cluster 14 39 evm.TU.Chr11.959 3.61 4.2 27.6% feature · violin
Cluster 14 40 evm.TU.Chr4.1663 5.70 4.2 24.8% feature · violin
Cluster 14 41 evm.TU.Chr3.739 3.09 4.2 28.6% feature · violin
Cluster 14 42 evm.TU.Chr14.489 6.99 4.2 23.8% feature · violin
Cluster 14 43 evm.TU.Chr10.554 4.00 4.1 25.7% feature · violin
Cluster 14 44 evm.TU.Chr1.1235 3.88 3.9 24.8% feature · violin
Cluster 14 45 evm.TU.Chr2.1087 0.90 3.9 88.6% feature · violin
Cluster 14 46 evm.TU.Chr9.1159 3.42 3.9 25.7% feature · violin
Cluster 14 47 evm.TU.Chr14.312 5.03 3.9 22.9% feature · violin
Cluster 14 48 evm.TU.Chr11.997 3.56 3.9 24.8% feature · violin
Cluster 14 49 evm.TU.Chr2.491 0.96 3.8 89.5% feature · violin
Cluster 14 50 evm.TU.Chr14.490 4.48 3.8 22.9% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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