Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr10.1536 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 evm.TU.Chr10.1044 7.53 43.5 93.4% feature · violin
Cluster 19 2 evm.TU.Chr8.268 7.17 38.8 83.3% feature · violin
Cluster 19 3 evm.TU.Chr3.1094 7.05 36.2 78.0% feature · violin
Cluster 19 4 evm.TU.Chr3.1095 6.56 32.0 69.7% feature · violin
Cluster 19 5 evm.TU.Chr4.1732 2.80 24.9 79.6% feature · violin
Cluster 19 6 evm.TU.Chr8.227 2.34 22.4 88.2% feature · violin
Cluster 19 7 evm.TU.Chr14.632 3.15 21.9 65.1% feature · violin
Cluster 19 8 evm.TU.Chr10.1357 2.44 21.3 78.6% feature · violin
Cluster 19 9 evm.TU.Chr4.579 2.56 19.8 73.4% feature · violin
Cluster 19 10 evm.TU.Chr9.881 2.46 19.7 66.5% feature · violin
Cluster 19 11 evm.TU.Chr3.394 1.81 18.3 82.7% feature · violin
Cluster 19 12 evm.TU.Chr4.1622 6.75 17.9 38.1% feature · violin
Cluster 19 13 evm.TU.Chr1.1032 1.54 17.7 85.2% feature · violin
Cluster 19 14 evm.TU.Chr8.331 2.26 17.4 61.1% feature · violin
Cluster 19 15 evm.TU.Chr10.1473 1.59 17.2 78.8% feature · violin
Cluster 19 16 evm.TU.Chr8.983 5.77 17.0 36.9% feature · violin
Cluster 19 17 evm.TU.Chr13.759 2.32 16.1 51.7% feature · violin
Cluster 19 18 evm.TU.Chr14.342 2.41 14.9 47.5% feature · violin
Cluster 19 19 evm.TU.Chr14.814 4.09 13.6 31.6% feature · violin
Cluster 19 20 evm.TU.Chr6.1056 1.79 13.4 53.3% feature · violin
Cluster 19 21 evm.TU.Chr10.506 2.20 13.1 42.6% feature · violin
Cluster 19 22 evm.TU.Chr8.671 2.61 12.5 35.0% feature · violin
Cluster 19 23 evm.TU.Chr13.717 2.69 12.5 34.3% feature · violin
Cluster 19 24 evm.TU.Chr4.1552 2.32 12.2 37.6% feature · violin
Cluster 19 25 evm.TU.Chr6.1295 5.17 12.2 26.6% feature · violin
Cluster 19 26 evm.TU.Chr1.1461 1.84 12.0 50.5% feature · violin
Cluster 19 27 evm.TU.Chr14.732 1.48 12.0 67.9% feature · violin
Cluster 19 28 evm.TU.Chr9.1235 1.24 11.4 63.2% feature · violin
Cluster 19 29 evm.TU.Chr12.1296 1.35 11.4 54.6% feature · violin
Cluster 19 30 evm.TU.Chr2.482 2.40 11.3 33.6% feature · violin
Cluster 19 31 evm.TU.Chr8.915 1.47 11.2 54.2% feature · violin
Cluster 19 32 evm.TU.Chr7.711 0.97 10.3 83.1% feature · violin
Cluster 19 33 evm.TU.Chr4.932 3.40 10.0 24.3% feature · violin
Cluster 19 34 evm.TU.Chr3.1004 2.34 10.0 29.3% feature · violin
Cluster 19 35 evm.TU.Chr4.722 1.68 9.5 35.5% feature · violin
Cluster 19 36 evm.TU.Chr10.1536 2.03 9.5 30.1% feature · violin
Cluster 19 37 evm.TU.Chr4.314 1.61 9.3 36.6% feature · violin
Cluster 19 38 evm.TU.Chr6.372 2.06 9.3 29.0% feature · violin
Cluster 19 39 evm.TU.Chr4.954 1.47 9.1 38.6% feature · violin
Cluster 19 40 evm.TU.Chr6.1297 3.13 8.6 21.4% feature · violin
Cluster 19 41 evm.TU.Chr8.921 0.82 8.5 68.4% feature · violin
Cluster 19 42 evm.TU.Chr13.671 1.51 8.5 33.8% feature · violin
Cluster 19 43 evm.TU.Chr4.358 2.26 8.1 23.4% feature · violin
Cluster 19 44 evm.TU.Chr14.832 1.41 8.1 33.6% feature · violin
Cluster 19 45 evm.TU.Chr1.583 1.57 8.0 30.3% feature · violin
Cluster 19 46 evm.TU.Chr10.329 3.58 7.9 18.5% feature · violin
Cluster 19 47 evm.TU.Chr1.1188 1.42 7.8 32.7% feature · violin
Cluster 19 48 evm.TU.Chr8.1294 0.83 7.7 66.2% feature · violin
Cluster 19 49 evm.TU.Chr3.1145 0.84 7.7 54.0% feature · violin
Cluster 19 50 evm.TU.Chr7.698 1.23 7.7 37.9% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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