Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr10.1843 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 evm.TU.Chr9.434 3.02 20.8 96.7% feature · violin
Cluster 15 2 evm.TU.Chr3.1191 3.06 19.9 95.9% feature · violin
Cluster 15 3 evm.TU.Chr1.1136 2.56 18.7 93.1% feature · violin
Cluster 15 4 evm.TU.Chr3.77 2.26 18.6 98.0% feature · violin
Cluster 15 5 evm.TU.Chr9.228 2.47 17.8 92.7% feature · violin
Cluster 15 6 evm.TU.Chr3.882 2.36 17.6 98.8% feature · violin
Cluster 15 7 evm.TU.Chr6.654 1.98 17.5 96.7% feature · violin
Cluster 15 8 evm.TU.Chr13.618 2.71 16.7 90.2% feature · violin
Cluster 15 9 evm.TU.Chr10.561 2.26 16.3 93.1% feature · violin
Cluster 15 10 evm.TU.Chr14.546 2.23 16.2 91.8% feature · violin
Cluster 15 11 evm.TU.Chr3.1311 1.95 15.9 94.3% feature · violin
Cluster 15 12 evm.TU.Chr6.862 2.26 15.7 89.8% feature · violin
Cluster 15 13 evm.TU.Chr10.385 2.57 15.6 91.0% feature · violin
Cluster 15 14 evm.TU.Chr7.897 1.97 15.5 95.1% feature · violin
Cluster 15 15 evm.TU.Chr10.1784 2.43 15.2 90.6% feature · violin
Cluster 15 16 evm.TU.scaffold_750.20 2.46 15.2 87.8% feature · violin
Cluster 15 17 evm.TU.Chr7.667 2.27 15.0 92.2% feature · violin
Cluster 15 18 evm.TU.Chr5.1473 2.39 14.6 88.2% feature · violin
Cluster 15 19 evm.TU.Chr6.208 2.15 14.1 88.6% feature · violin
Cluster 15 20 evm.TU.Chr7.1069 2.45 14.0 82.4% feature · violin
Cluster 15 21 evm.TU.Chr9.770 2.14 13.8 90.2% feature · violin
Cluster 15 22 evm.TU.Chr9.1338 5.63 13.4 52.7% feature · violin
Cluster 15 23 evm.TU.Chr10.1755 2.13 13.1 81.6% feature · violin
Cluster 15 24 evm.TU.Chr9.311 2.39 12.9 80.0% feature · violin
Cluster 15 25 evm.TU.Chr9.121 1.99 12.9 84.9% feature · violin
Cluster 15 26 evm.TU.Chr7.695 2.28 12.9 80.0% feature · violin
Cluster 15 27 evm.TU.Chr5.468 2.11 12.8 82.0% feature · violin
Cluster 15 28 evm.TU.Chr12.803 2.04 12.8 86.5% feature · violin
Cluster 15 29 evm.TU.Chr9.441 1.97 12.5 86.1% feature · violin
Cluster 15 30 evm.TU.Chr3.39 1.90 12.4 86.9% feature · violin
Cluster 15 31 evm.TU.Chr3.1362 1.95 12.2 89.8% feature · violin
Cluster 15 32 evm.TU.Chr6.1173 2.10 12.2 83.3% feature · violin
Cluster 15 33 evm.TU.Chr10.1442 2.13 12.1 78.8% feature · violin
Cluster 15 34 evm.TU.Chr1.1275 2.05 11.9 79.2% feature · violin
Cluster 15 35 evm.TU.Chr8.1008 1.96 11.7 78.8% feature · violin
Cluster 15 36 evm.TU.Chr4.1431 2.35 11.3 72.7% feature · violin
Cluster 15 37 evm.TU.Chr4.1007 1.74 11.3 82.4% feature · violin
Cluster 15 38 evm.TU.Chr2.430 2.22 11.1 67.8% feature · violin
Cluster 15 39 evm.TU.Chr10.1843 2.05 11.0 76.3% feature · violin
Cluster 15 40 evm.TU.Chr3.642 1.75 11.0 83.3% feature · violin
Cluster 15 41 evm.TU.Chr6.1324 1.98 10.9 76.3% feature · violin
Cluster 15 42 evm.TU.Chr9.1265 1.79 10.8 84.1% feature · violin
Cluster 15 43 evm.TU.Chr12.912 2.11 10.7 71.0% feature · violin
Cluster 15 44 evm.TU.Chr5.1296 1.85 10.7 76.7% feature · violin
Cluster 15 45 evm.TU.Chr6.609 2.01 10.5 77.1% feature · violin
Cluster 15 46 evm.TU.Chr8.1182 1.95 10.4 74.3% feature · violin
Cluster 15 47 evm.TU.Chr5.334 1.47 10.2 91.0% feature · violin
Cluster 15 48 evm.TU.Chr10.1057 1.78 10.1 77.6% feature · violin
Cluster 15 49 evm.TU.Chr3.1167 3.70 9.8 42.9% feature · violin
Cluster 15 50 evm.TU.Chr6.1429 4.61 9.7 39.6% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

TOP