Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr10.212 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 22 1 evm.TU.Chr12.518 12.38 11.8 100.0% feature · violin
Cluster 22 2 evm.TU.Chr5.757 10.88 11.6 97.9% feature · violin
Cluster 22 3 evm.TU.Chr7.1122 6.62 11.1 97.9% feature · violin
Cluster 22 4 evm.TU.Chr9.1137 11.73 10.1 85.1% feature · violin
Cluster 22 5 evm.TU.Chr1.1032 3.16 9.4 97.9% feature · violin
Cluster 22 6 evm.TU.Chr6.1216 3.89 9.1 91.5% feature · violin
Cluster 22 7 evm.TU.Chr4.682 3.72 8.8 87.2% feature · violin
Cluster 22 8 evm.TU.Chr1.882 8.92 8.3 70.2% feature · violin
Cluster 22 9 evm.TU.Chr10.1356 4.42 8.1 80.9% feature · violin
Cluster 22 10 evm.TU.Chr10.212 4.25 7.9 80.9% feature · violin
Cluster 22 11 evm.TU.Chr9.1619 5.78 7.6 68.1% feature · violin
Cluster 22 12 evm.TU.Chr2.1119 0.89 6.6 100.0% feature · violin
Cluster 22 13 evm.TU.Chr14.283 10.82 6.5 55.3% feature · violin
Cluster 22 14 evm.TU.Chr9.1586 8.76 6.5 55.3% feature · violin
Cluster 22 15 evm.TU.Chr3.263 4.95 6.1 55.3% feature · violin
Cluster 22 16 evm.TU.Chr9.1020 7.63 5.7 48.9% feature · violin
Cluster 22 17 evm.TU.Chr8.1355 2.78 5.4 68.1% feature · violin
Cluster 22 18 evm.TU.Chr5.1205 2.01 5.4 83.0% feature · violin
Cluster 22 19 evm.TU.Chr6.195 7.41 5.2 44.7% feature · violin
Cluster 22 20 evm.TU.Chr9.881 2.50 5.1 74.5% feature · violin
Cluster 22 21 evm.TU.Chr10.30 4.33 5.0 46.8% feature · violin
Cluster 22 22 evm.TU.Chr4.1846 5.66 4.8 42.6% feature · violin
Cluster 22 23 evm.TU.Chr6.186 2.65 4.7 59.6% feature · violin
Cluster 22 24 evm.TU.Chr2.551 7.18 4.7 40.4% feature · violin
Cluster 22 25 evm.TU.Chr6.496 2.40 4.7 66.0% feature · violin
Cluster 22 26 evm.TU.Chr7.297 3.55 4.6 46.8% feature · violin
Cluster 22 27 evm.TU.Chr8.860 2.67 4.6 55.3% feature · violin
Cluster 22 28 evm.TU.Chr10.1357 2.06 4.6 72.3% feature · violin
Cluster 22 29 evm.TU.Chr14.189 3.75 4.5 44.7% feature · violin
Cluster 22 30 evm.TU.Chr8.668 3.98 4.5 44.7% feature · violin
Cluster 22 31 evm.TU.Chr9.899 2.29 4.4 59.6% feature · violin
Cluster 22 32 evm.TU.Chr8.921 1.52 4.4 74.5% feature · violin
Cluster 22 33 evm.TU.Chr12.1231 2.05 4.3 66.0% feature · violin
Cluster 22 34 evm.TU.Chr10.289 3.60 4.3 42.6% feature · violin
Cluster 22 35 evm.TU.Chr10.449 3.59 4.3 42.6% feature · violin
Cluster 22 36 evm.TU.Chr1.834 2.69 4.2 48.9% feature · violin
Cluster 22 37 evm.TU.Chr4.314 2.47 4.2 53.2% feature · violin
Cluster 22 38 evm.TU.Chr6.1648 3.77 4.2 40.4% feature · violin
Cluster 22 39 evm.TU.Chr5.416_evm.TU.Chr5.418 4.24 4.1 38.3% feature · violin
Cluster 22 40 evm.TU.Chr12.935 3.51 4.0 40.4% feature · violin
Cluster 22 41 evm.TU.Chr10.610 1.98 4.0 59.6% feature · violin
Cluster 22 42 evm.TU.Chr5.1135 4.84 4.0 36.2% feature · violin
Cluster 22 43 evm.TU.Chr10.169 1.87 4.0 61.7% feature · violin
Cluster 22 44 evm.TU.Chr4.1565 2.29 4.0 53.2% feature · violin
Cluster 22 45 evm.TU.Chr2.1276 1.51 4.0 85.1% feature · violin
Cluster 22 46 evm.TU.Chr9.1760 2.76 3.9 44.7% feature · violin
Cluster 22 47 evm.TU.Chr5.1265 4.83 3.8 34.0% feature · violin
Cluster 22 48 evm.TU.Chr3.572 2.05 3.8 55.3% feature · violin
Cluster 22 49 evm.TU.Chr7.718 3.64 3.7 36.2% feature · violin
Cluster 22 50 evm.TU.Chr5.721 3.54 3.7 36.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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