Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr11.1101 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 evm.TU.Chr4.54 14.72 5.7 100.0% feature · violin
Cluster 10 2 evm.TU.Chr2.783 15.36 5.7 100.0% feature · violin
Cluster 10 3 evm.TU.Chr10.1615 12.70 5.7 100.0% feature · violin
Cluster 10 4 evm.TU.Chr3.1302 13.95 5.7 100.0% feature · violin
Cluster 10 5 evm.TU.Chr10.187 13.79 5.7 100.0% feature · violin
Cluster 10 6 evm.TU.Chr4.1740 11.91 5.7 100.0% feature · violin
Cluster 10 7 evm.TU.Chr4.1972 7.14 5.5 100.0% feature · violin
Cluster 10 8 evm.TU.Chr6.1423 7.47 5.0 90.9% feature · violin
Cluster 10 9 evm.TU.Chr6.941 6.50 4.8 90.9% feature · violin
Cluster 10 10 evm.TU.Chr10.1407 14.08 4.7 81.8% feature · violin
Cluster 10 11 evm.TU.Chr4.1215 11.22 4.7 81.8% feature · violin
Cluster 10 12 evm.TU.Chr9.1347 10.86 4.2 72.7% feature · violin
Cluster 10 13 evm.TU.Chr4.2000 7.90 3.6 63.6% feature · violin
Cluster 10 14 evm.TU.Chr3.279 6.94 3.6 63.6% feature · violin
Cluster 10 15 evm.TU.Chr11.1101 7.00 3.6 63.6% feature · violin
Cluster 10 16 evm.TU.Chr6.468 3.35 3.5 81.8% feature · violin
Cluster 10 17 evm.TU.Chr10.994 2.97 3.4 81.8% feature · violin
Cluster 10 18 evm.TU.Chr3.1214 4.78 3.3 63.6% feature · violin
Cluster 10 19 evm.TU.Chr4.1763 1.77 3.0 100.0% feature · violin
Cluster 10 20 evm.TU.Chr10.254 1.62 2.6 100.0% feature · violin
Cluster 10 21 evm.TU.Chr9.1336 31.45 2.6 45.5% feature · violin
Cluster 10 22 evm.TU.Chr3.729 11.98 2.6 45.5% feature · violin
Cluster 10 23 evm.TU.Chr5.688 9.66 2.6 45.5% feature · violin
Cluster 10 24 evm.TU.Chr1.1154 7.07 2.6 45.5% feature · violin
Cluster 10 25 evm.TU.Chr3.1300 6.07 2.5 45.5% feature · violin
Cluster 10 26 evm.TU.Chr5.816 5.29 2.5 45.5% feature · violin
Cluster 10 27 evm.TU.Chr6.348 2.63 2.4 63.6% feature · violin
Cluster 10 28 evm.TU.Chr10.56 1.94 2.4 72.7% feature · violin
Cluster 10 29 evm.TU.Chr6.1145 4.03 2.3 45.5% feature · violin
Cluster 10 30 evm.TU.Chr12.856 1.47 2.2 100.0% feature · violin
Cluster 10 31 evm.TU.Chr1.1136 1.48 2.1 90.9% feature · violin
Cluster 10 32 evm.TU.Chr11.389 8.15 2.1 36.4% feature · violin
Cluster 10 33 evm.TU.Chr2.535 7.08 2.1 36.4% feature · violin
Cluster 10 34 evm.TU.Chr4.1487 4.74 1.9 36.4% feature · violin
Cluster 10 35 evm.TU.Chr2.491 1.66 1.9 100.0% feature · violin
Cluster 10 36 evm.TU.Chr4.523 4.54 1.9 36.4% feature · violin
Cluster 10 37 evm.TU.Chr12.415 2.72 1.9 45.5% feature · violin
Cluster 10 38 evm.TU.Chr9.231 4.30 1.9 36.4% feature · violin
Cluster 10 39 evm.TU.Chr7.230 3.98 1.9 36.4% feature · violin
Cluster 10 40 evm.TU.Chr8.559 4.03 1.8 36.4% feature · violin
Cluster 10 41 evm.TU.Chr9.963 2.52 1.8 45.5% feature · violin
Cluster 10 42 evm.TU.Chr10.107 3.65 1.8 36.4% feature · violin
Cluster 10 43 evm.TU.Chr6.1008 3.62 1.8 36.4% feature · violin
Cluster 10 44 evm.TU.Chr12.456 1.86 1.8 90.9% feature · violin
Cluster 10 45 evm.TU.Chr8.973 3.18 1.7 36.4% feature · violin
Cluster 10 46 evm.TU.Chr9.1560 2.22 1.7 45.5% feature · violin
Cluster 10 47 evm.TU.Chr8.518 1.85 1.7 63.6% feature · violin
Cluster 10 48 evm.TU.Chr6.250 1.99 1.6 45.5% feature · violin
Cluster 10 49 evm.TU.Chr3.648 2.63 1.6 36.4% feature · violin
Cluster 10 50 evm.TU.Chr11.617 7.95 1.6 27.3% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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