Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr12.432 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 25 1 evm.TU.Chr5.617 11.13 16.3 86.7% feature · violin
Cluster 25 2 evm.TU.Chr11.696 7.93 15.8 86.7% feature · violin
Cluster 25 3 evm.TU.Chr14.743 3.02 15.2 100.0% feature · violin
Cluster 25 4 evm.TU.Chr2.491 3.15 14.9 97.5% feature · violin
Cluster 25 5 evm.TU.Chr9.211 11.37 14.9 79.2% feature · violin
Cluster 25 6 evm.TU.Chr7.772 7.46 14.7 80.8% feature · violin
Cluster 25 7 evm.TU.Chr8.668 6.90 13.8 77.5% feature · violin
Cluster 25 8 evm.TU.Chr11.639 10.90 13.6 72.5% feature · violin
Cluster 25 9 evm.TU.Chr4.1605 9.72 13.6 72.5% feature · violin
Cluster 25 10 evm.TU.Chr8.516 3.48 11.9 87.5% feature · violin
Cluster 25 11 evm.TU.Chr10.254 1.98 11.9 96.7% feature · violin
Cluster 25 12 evm.TU.Chr2.1087 2.44 11.7 94.2% feature · violin
Cluster 25 13 evm.TU.Chr4.1763 1.96 11.3 99.2% feature · violin
Cluster 25 14 evm.TU.Chr12.432 9.48 10.9 58.3% feature · violin
Cluster 25 15 evm.TU.Chr6.1145 4.75 10.4 61.7% feature · violin
Cluster 25 16 evm.TU.Chr12.856 1.74 10.1 89.2% feature · violin
Cluster 25 17 evm.TU.Chr6.485 1.80 9.7 95.8% feature · violin
Cluster 25 18 evm.TU.Chr3.758 2.69 9.4 72.5% feature · violin
Cluster 25 19 evm.TU.Chr14.465 4.68 9.2 53.3% feature · violin
Cluster 25 20 evm.TU.Chr9.1046 2.32 9.1 83.3% feature · violin
Cluster 25 21 evm.TU.Chr12.434 6.29 8.9 49.2% feature · violin
Cluster 25 22 evm.TU.Chr2.813 4.06 8.7 53.3% feature · violin
Cluster 25 23 evm.TU.Chr3.355 5.15 8.6 50.0% feature · violin
Cluster 25 24 evm.TU.Chr1.1092 6.67 8.3 45.0% feature · violin
Cluster 25 25 evm.TU.Chr3.1167 3.94 8.2 50.8% feature · violin
Cluster 25 26 evm.TU.Chr6.357 2.17 8.2 89.2% feature · violin
Cluster 25 27 evm.TU.Chr6.1103 2.18 8.1 80.8% feature · violin
Cluster 25 28 evm.TU.Chr4.1785 2.60 8.0 65.8% feature · violin
Cluster 25 29 evm.TU.Chr1.1083 2.04 7.9 83.3% feature · violin
Cluster 25 30 evm.TU.Chr8.515 2.23 7.9 78.3% feature · violin
Cluster 25 31 evm.TU.Chr4.944 4.46 7.9 45.8% feature · violin
Cluster 25 32 evm.TU.Chr3.1235 5.12 7.8 44.2% feature · violin
Cluster 25 33 evm.TU.Chr14.273 2.68 7.8 61.7% feature · violin
Cluster 25 34 evm.TU.Chr10.1252 1.90 7.2 73.3% feature · violin
Cluster 25 35 evm.TU.Chr8.876 4.89 7.1 40.0% feature · violin
Cluster 25 36 evm.TU.Chr4.958 6.31 6.9 37.5% feature · violin
Cluster 25 37 evm.TU.Chr12.681 2.85 6.6 46.7% feature · violin
Cluster 25 38 evm.TU.Chr6.941 3.44 6.6 43.3% feature · violin
Cluster 25 39 evm.TU.Chr10.994 1.92 6.5 64.2% feature · violin
Cluster 25 40 evm.TU.Chr5.1324 3.05 6.4 43.3% feature · violin
Cluster 25 41 evm.TU.Chr6.281 5.45 6.3 35.0% feature · violin
Cluster 25 42 evm.TU.Chr9.1477 2.91 6.0 41.7% feature · violin
Cluster 25 43 evm.TU.Chr9.1160 4.38 6.0 35.0% feature · violin
Cluster 25 44 evm.TU.Chr8.973 3.18 5.9 38.3% feature · violin
Cluster 25 45 evm.TU.Chr5.1284 6.09 5.8 31.7% feature · violin
Cluster 25 46 evm.TU.Chr3.494_evm.TU.Chr3.495 5.65 5.8 31.7% feature · violin
Cluster 25 47 evm.TU.Chr2.709 1.86 5.7 56.7% feature · violin
Cluster 25 48 evm.TU.Chr12.841 2.11 5.7 50.0% feature · violin
Cluster 25 49 evm.TU.Chr3.757 2.18 5.6 49.2% feature · violin
Cluster 25 50 evm.TU.Chr5.621 1.89 5.6 59.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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