Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr13.519 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 27 1 evm.TU.Chr11.517 14.85 10.4 100.0% feature · violin
Cluster 27 2 evm.TU.Chr11.516 12.20 10.1 97.2% feature · violin
Cluster 27 3 evm.TU.Chr11.1016 11.50 10.1 97.2% feature · violin
Cluster 27 4 evm.TU.Chr14.743 2.33 6.9 97.2% feature · violin
Cluster 27 5 evm.TU.Chr8.668 5.56 6.8 72.2% feature · violin
Cluster 27 6 evm.TU.Chr9.1159 6.33 6.7 66.7% feature · violin
Cluster 27 7 evm.TU.Chr8.516 3.30 6.6 91.7% feature · violin
Cluster 27 8 evm.TU.Chr2.491 2.40 6.5 97.2% feature · violin
Cluster 27 9 evm.TU.Chr12.856 2.10 6.4 97.2% feature · violin
Cluster 27 10 evm.TU.Chr9.1160 6.21 6.4 63.9% feature · violin
Cluster 27 11 evm.TU.Chr2.1087 2.34 6.2 97.2% feature · violin
Cluster 27 12 evm.TU.Chr8.515 2.95 6.2 88.9% feature · violin
Cluster 27 13 evm.TU.Chr5.1284 7.36 5.9 58.3% feature · violin
Cluster 27 14 evm.TU.Chr6.1423 5.61 5.9 61.1% feature · violin
Cluster 27 15 evm.TU.Chr3.1167 4.60 5.9 63.9% feature · violin
Cluster 27 16 evm.TU.Chr10.254 1.76 5.8 94.4% feature · violin
Cluster 27 17 evm.TU.Chr6.485 2.06 5.7 97.2% feature · violin
Cluster 27 18 evm.TU.Chr13.519 9.24 5.4 52.8% feature · violin
Cluster 27 19 evm.TU.Chr6.1028 8.07 5.4 52.8% feature · violin
Cluster 27 20 evm.TU.Chr7.1122 3.37 5.4 72.2% feature · violin
Cluster 27 21 evm.TU.Chr6.1145 4.38 5.3 58.3% feature · violin
Cluster 27 22 evm.TU.Chr14.1028 9.24 5.2 50.0% feature · violin
Cluster 27 23 evm.TU.Chr6.1402 5.51 5.1 52.8% feature · violin
Cluster 27 24 evm.TU.Chr9.1140 5.64 4.7 47.2% feature · violin
Cluster 27 25 evm.TU.Chr6.357 2.21 4.5 91.7% feature · violin
Cluster 27 26 evm.TU.Chr12.187 6.27 4.5 44.4% feature · violin
Cluster 27 27 evm.TU.Chr9.1590 4.54 4.5 47.2% feature · violin
Cluster 27 28 evm.TU.Chr5.826 5.06 4.3 44.4% feature · violin
Cluster 27 29 evm.TU.Chr9.1714 2.96 4.3 55.6% feature · violin
Cluster 27 30 evm.TU.Chr4.1785 2.32 4.0 61.1% feature · violin
Cluster 27 31 evm.TU.Chr4.1763 1.38 4.0 97.2% feature · violin
Cluster 27 32 evm.TU.Chr4.874 4.25 3.9 41.7% feature · violin
Cluster 27 33 evm.TU.Chr6.582 1.85 3.8 69.4% feature · violin
Cluster 27 34 evm.TU.Chr5.691 4.15 3.6 38.9% feature · violin
Cluster 27 35 evm.TU.Chr5.151 2.67 3.3 44.4% feature · violin
Cluster 27 36 evm.TU.Chr12.415 2.59 3.3 44.4% feature · violin
Cluster 27 37 evm.TU.Chr6.1429 3.76 3.3 36.1% feature · violin
Cluster 27 38 evm.TU.Chr11.1079 4.64 3.2 33.3% feature · violin
Cluster 27 39 evm.TU.Chr10.1536 2.49 3.2 44.4% feature · violin
Cluster 27 40 evm.TU.Chr3.1037 3.43 3.2 36.1% feature · violin
Cluster 27 41 evm.TU.Chr1.642 1.45 3.1 100.0% feature · violin
Cluster 27 42 evm.TU.Chr9.346 2.44 3.0 41.7% feature · violin
Cluster 27 43 evm.TU.Chr10.1252 1.55 3.0 69.4% feature · violin
Cluster 27 44 evm.TU.Chr3.252 8.79 2.9 27.8% feature · violin
Cluster 27 45 evm.TU.Chr12.841 1.80 2.8 52.8% feature · violin
Cluster 27 46 evm.TU.Chr2.1163 3.06 2.8 33.3% feature · violin
Cluster 27 47 evm.TU.Chr1.719 5.59 2.8 27.8% feature · violin
Cluster 27 48 evm.TU.Chr6.600 5.13 2.7 27.8% feature · violin
Cluster 27 49 evm.TU.Chr9.293 2.25 2.7 38.9% feature · violin
Cluster 27 50 evm.TU.Chr5.1324 2.43 2.7 36.1% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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