Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr3.1445 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 evm.TU.Chr12.437 7.75 18.6 83.2% feature · violin
Cluster 13 2 evm.TU.Chr12.436 7.97 15.8 69.8% feature · violin
Cluster 13 3 evm.TU.Chr12.438 7.92 15.8 69.8% feature · violin
Cluster 13 4 evm.TU.Chr14.183 9.10 14.3 62.6% feature · violin
Cluster 13 5 evm.TU.Chr12.551 6.92 13.7 61.5% feature · violin
Cluster 13 6 evm.TU.Chr3.1445 2.78 12.7 78.2% feature · violin
Cluster 13 7 evm.TU.Chr12.557 10.23 12.7 55.3% feature · violin
Cluster 13 8 evm.TU.Chr2.425 8.07 12.5 55.3% feature · violin
Cluster 13 9 evm.TU.Chr12.542 6.96 12.0 54.2% feature · violin
Cluster 13 10 evm.TU.Chr4.1572 9.02 12.0 52.5% feature · violin
Cluster 13 11 evm.TU.Chr3.882 1.65 11.6 87.2% feature · violin
Cluster 13 12 evm.TU.Chr7.613 7.53 11.6 51.4% feature · violin
Cluster 13 13 evm.TU.Chr4.283 7.73 11.4 50.3% feature · violin
Cluster 13 14 evm.TU.Chr3.1191 1.99 11.0 88.8% feature · violin
Cluster 13 15 evm.TU.Chr12.357 7.55 10.7 47.5% feature · violin
Cluster 13 16 evm.TU.Chr4.1007 1.97 10.7 84.4% feature · violin
Cluster 13 17 evm.TU.Chr10.1094 2.81 10.6 67.0% feature · violin
Cluster 13 18 evm.TU.Chr11.862 2.96 10.6 62.6% feature · violin
Cluster 13 19 evm.TU.Chr4.786 8.44 10.5 46.4% feature · violin
Cluster 13 20 evm.TU.Chr12.543 5.84 10.3 47.5% feature · violin
Cluster 13 21 evm.TU.Chr9.441 1.81 10.1 83.2% feature · violin
Cluster 13 22 evm.TU.Chr14.546 1.74 10.0 89.4% feature · violin
Cluster 13 23 evm.TU.Chr3.1311 1.49 9.9 91.6% feature · violin
Cluster 13 24 evm.TU.Chr7.667 1.73 9.7 84.9% feature · violin
Cluster 13 25 evm.TU.Chr13.556 2.73 9.5 59.8% feature · violin
Cluster 13 26 evm.TU.Chr5.468 1.89 9.5 82.1% feature · violin
Cluster 13 27 evm.TU.Chr9.71 1.61 9.4 88.3% feature · violin
Cluster 13 28 evm.TU.Chr4.614 8.49 9.3 40.8% feature · violin
Cluster 13 29 evm.TU.Chr6.654 1.29 9.3 93.3% feature · violin
Cluster 13 30 evm.TU.Chr8.315 2.05 9.2 69.3% feature · violin
Cluster 13 31 evm.TU.Chr9.434 1.67 9.2 87.2% feature · violin
Cluster 13 32 evm.TU.Chr9.986 6.77 9.2 40.8% feature · violin
Cluster 13 33 evm.TU.Chr4.1537 7.92 9.2 40.2% feature · violin
Cluster 13 34 evm.TU.Chr7.888 8.15 9.0 39.7% feature · violin
Cluster 13 35 evm.TU.Chr5.334 1.36 8.9 86.6% feature · violin
Cluster 13 36 evm.TU.Chr8.1558 2.26 8.9 61.5% feature · violin
Cluster 13 37 evm.TU.scaffold_754.56 6.72 8.7 39.1% feature · violin
Cluster 13 38 evm.TU.Chr12.553 9.24 8.7 38.0% feature · violin
Cluster 13 39 evm.TU.Chr4.785 8.47 8.7 38.0% feature · violin
Cluster 13 40 evm.TU.Chr9.985 6.19 8.6 38.5% feature · violin
Cluster 13 41 evm.TU.Chr9.770 1.55 8.6 80.4% feature · violin
Cluster 13 42 evm.TU.Chr3.1167 3.73 8.5 43.6% feature · violin
Cluster 13 43 evm.TU.Chr9.1567 1.94 8.4 65.4% feature · violin
Cluster 13 44 evm.TU.Chr9.228 1.35 8.2 82.1% feature · violin
Cluster 13 45 evm.TU.Chr6.1330 10.48 8.1 35.2% feature · violin
Cluster 13 46 evm.TU.Chr4.818 2.17 8.0 55.3% feature · violin
Cluster 13 47 evm.TU.Chr12.558 6.83 7.8 34.6% feature · violin
Cluster 13 48 evm.TU.Chr12.334 1.67 7.8 72.1% feature · violin
Cluster 13 49 evm.TU.Chr9.1265 1.49 7.8 78.2% feature · violin
Cluster 13 50 evm.TU.Chr9.311 1.71 7.7 69.3% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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