Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr3.662 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 21 1 evm.TU.Chr7.597 3.17 12.5 81.6% feature · violin
Cluster 21 2 evm.TU.Chr13.861 8.64 12.4 57.1% feature · violin
Cluster 21 3 evm.TU.Chr2.1113 3.24 11.7 72.4% feature · violin
Cluster 21 4 evm.TU.Chr3.662 2.49 9.0 67.5% feature · violin
Cluster 21 5 evm.TU.Chr1.1186 2.17 9.0 78.5% feature · violin
Cluster 21 6 evm.TU.Chr6.1058 2.80 8.5 57.1% feature · violin
Cluster 21 7 evm.TU.Chr10.1357 2.05 8.0 78.5% feature · violin
Cluster 21 8 evm.TU.Chr8.227 1.86 7.8 85.9% feature · violin
Cluster 21 9 evm.TU.Chr9.337 7.44 7.7 35.6% feature · violin
Cluster 21 10 evm.TU.Chr3.394 1.63 7.6 82.2% feature · violin
Cluster 21 11 evm.TU.Chr8.1017 2.16 7.6 67.5% feature · violin
Cluster 21 12 evm.TU.Chr2.882 2.01 7.1 56.4% feature · violin
Cluster 21 13 evm.TU.Chr1.1475 1.95 6.9 56.4% feature · violin
Cluster 21 14 evm.TU.Chr1.1188 2.37 6.7 46.6% feature · violin
Cluster 21 15 evm.TU.Chr7.711 1.31 6.7 87.1% feature · violin
Cluster 21 16 evm.TU.Chr8.1297 1.81 6.7 57.7% feature · violin
Cluster 21 17 evm.TU.Chr5.1167 2.71 6.6 40.5% feature · violin
Cluster 21 18 evm.TU.Chr1.1125 0.71 6.4 95.7% feature · violin
Cluster 21 19 evm.TU.Chr14.882 2.54 6.4 41.1% feature · violin
Cluster 21 20 evm.TU.Chr4.637 1.56 6.2 74.8% feature · violin
Cluster 21 21 evm.TU.Chr7.142 1.11 6.1 85.9% feature · violin
Cluster 21 22 evm.TU.Chr9.79 2.61 6.1 37.4% feature · violin
Cluster 21 23 evm.TU.Chr9.320_evm.TU.Chr9.319 2.51 5.9 37.4% feature · violin
Cluster 21 24 evm.TU.Chr8.1294 1.19 5.3 71.2% feature · violin
Cluster 21 25 evm.TU.Chr8.331 1.50 5.2 52.1% feature · violin
Cluster 21 26 evm.TU.Chr11.1253 1.50 5.0 46.0% feature · violin
Cluster 21 27 evm.TU.Chr13.142 1.68 4.9 41.7% feature · violin
Cluster 21 28 evm.TU.Chr12.791 0.76 4.9 79.8% feature · violin
Cluster 21 29 evm.TU.Chr8.1460 2.11 4.8 33.1% feature · violin
Cluster 21 30 evm.TU.Chr3.1144 2.06 4.8 33.1% feature · violin
Cluster 21 31 evm.TU.Chr4.1814 1.58 4.6 40.5% feature · violin
Cluster 21 32 evm.TU.Chr9.139 3.67 4.6 23.9% feature · violin
Cluster 21 33 evm.TU.Chr3.661 1.50 4.6 45.4% feature · violin
Cluster 21 34 evm.TU.Chr9.216 0.88 4.6 78.5% feature · violin
Cluster 21 35 evm.TU.Chr10.1755 0.90 4.5 67.5% feature · violin
Cluster 21 36 evm.TU.Chr4.646 1.81 4.5 34.4% feature · violin
Cluster 21 37 evm.TU.Chr10.1473 0.89 4.3 71.2% feature · violin
Cluster 21 38 evm.TU.Chr6.1492 3.63 4.2 21.5% feature · violin
Cluster 21 39 evm.TU.Chr6.501 2.67 4.0 23.3% feature · violin
Cluster 21 40 evm.TU.Chr7.175 1.92 4.0 28.8% feature · violin
Cluster 21 41 evm.TU.Chr9.80 2.37 4.0 24.5% feature · violin
Cluster 21 42 evm.TU.Chr8.620 2.71 3.9 22.7% feature · violin
Cluster 21 43 evm.TU.Chr14.760 2.57 3.8 22.7% feature · violin
Cluster 21 44 evm.TU.Chr6.1481 1.01 3.8 50.9% feature · violin
Cluster 21 45 evm.TU.Chr8.420 0.96 3.8 62.6% feature · violin
Cluster 21 46 evm.TU.Chr10.258 0.81 3.7 68.1% feature · violin
Cluster 21 47 evm.TU.Chr4.804 0.93 3.7 54.6% feature · violin
Cluster 21 48 evm.TU.Chr4.859 1.42 3.7 33.1% feature · violin
Cluster 21 49 evm.TU.Chr8.921 0.74 3.7 67.5% feature · violin
Cluster 21 50 evm.TU.Chr8.236 0.80 3.6 56.4% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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