Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr4.518 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 26 1 evm.TU.Chr9.1561 13.21 5.7 100.0% feature · violin
Cluster 26 2 evm.TU.Chr4.580 14.22 5.7 100.0% feature · violin
Cluster 26 3 evm.TU.Chr9.1691 12.25 5.7 100.0% feature · violin
Cluster 26 4 evm.TU.Chr14.792 9.40 5.2 90.9% feature · violin
Cluster 26 5 evm.TU.Chr1.1235 7.03 4.1 72.7% feature · violin
Cluster 26 6 evm.TU.Chr9.1170 11.93 3.7 63.6% feature · violin
Cluster 26 7 evm.TU.Chr4.748 10.34 3.6 63.6% feature · violin
Cluster 26 8 evm.TU.Chr6.941 5.65 3.3 63.6% feature · violin
Cluster 26 9 evm.TU.Chr11.997 5.65 3.0 54.5% feature · violin
Cluster 26 10 evm.TU.Chr4.1763 1.36 2.8 90.9% feature · violin
Cluster 26 11 evm.TU.Chr6.549 6.12 2.5 45.5% feature · violin
Cluster 26 12 evm.TU.Chr2.1087 1.50 2.4 90.9% feature · violin
Cluster 26 13 evm.TU.Chr5.691 4.47 2.4 45.5% feature · violin
Cluster 26 14 evm.TU.Chr14.743 1.40 2.2 90.9% feature · violin
Cluster 26 15 evm.TU.Chr9.1379 6.35 2.0 36.4% feature · violin
Cluster 26 16 evm.TU.Chr9.1477 2.92 2.0 45.5% feature · violin
Cluster 26 17 evm.TU.Chr10.254 1.13 2.0 90.9% feature · violin
Cluster 26 18 evm.TU.Chr4.487 4.89 2.0 36.4% feature · violin
Cluster 26 19 evm.TU.Chr14.438 1.85 1.9 81.8% feature · violin
Cluster 26 20 evm.TU.Chr5.151 2.72 1.9 45.5% feature · violin
Cluster 26 21 evm.TU.Chr13.759 2.21 1.9 54.5% feature · violin
Cluster 26 22 evm.TU.Chr2.491 0.71 1.7 72.7% feature · violin
Cluster 26 23 evm.TU.Chr2.709 1.87 1.7 54.5% feature · violin
Cluster 26 24 evm.TU.Chr6.582 1.44 1.7 63.6% feature · violin
Cluster 26 25 evm.TU.Chr1.957 1.68 1.6 54.5% feature · violin
Cluster 26 26 evm.TU.Chr8.668 2.75 1.6 36.4% feature · violin
Cluster 26 27 evm.TU.Chr6.1049 30.46 1.6 27.3% feature · violin
Cluster 26 28 evm.TU.Chr9.1014 9.23 1.6 27.3% feature · violin
Cluster 26 29 evm.TU.Chr8.1256 7.95 1.6 27.3% feature · violin
Cluster 26 30 evm.TU.Chr11.621 5.53 1.5 27.3% feature · violin
Cluster 26 31 evm.TU.Chr12.856 0.43 1.5 72.7% feature · violin
Cluster 26 32 evm.TU.Chr14.1225 1.99 1.5 45.5% feature · violin
Cluster 26 33 evm.TU.Chr4.518 2.45 1.5 36.4% feature · violin
Cluster 26 34 evm.TU.Chr14.312 5.00 1.5 27.3% feature · violin
Cluster 26 35 evm.TU.Chr13.556 1.84 1.5 45.5% feature · violin
Cluster 26 36 evm.TU.Chr4.1613 4.72 1.5 27.3% feature · violin
Cluster 26 37 evm.TU.Chr10.1198 4.63 1.5 27.3% feature · violin
Cluster 26 38 evm.TU.Chr2.361 2.26 1.4 36.4% feature · violin
Cluster 26 39 evm.TU.Chr7.695 1.20 1.4 63.6% feature · violin
Cluster 26 40 evm.TU.Chr12.344 4.07 1.4 27.3% feature · violin
Cluster 26 41 evm.TU.Chr1.681 2.18 1.4 36.4% feature · violin
Cluster 26 42 evm.TU.Chr3.745_evm.TU.Chr3.746 3.68 1.4 27.3% feature · violin
Cluster 26 43 evm.TU.Chr6.1206 3.58 1.4 27.3% feature · violin
Cluster 26 44 evm.TU.Chr8.518 1.61 1.3 54.5% feature · violin
Cluster 26 45 evm.TU.Chr9.1719 2.01 1.3 36.4% feature · violin
Cluster 26 46 evm.TU.Chr13.718 3.30 1.3 27.3% feature · violin
Cluster 26 47 evm.TU.Chr9.172 2.99 1.3 27.3% feature · violin
Cluster 26 48 evm.TU.Chr3.1370 1.78 1.3 36.4% feature · violin
Cluster 26 49 evm.TU.Chr6.468 1.29 1.3 45.5% feature · violin
Cluster 26 50 evm.TU.Chr1.1040 2.74 1.2 27.3% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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