Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr6.1238 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 evm.TU.Chr6.1238 13.36 11.1 97.7% feature · violin
Cluster 16 2 evm.TU.Chr8.1295 5.77 8.8 83.7% feature · violin
Cluster 16 3 evm.TU.Chr3.1037 7.23 8.7 79.1% feature · violin
Cluster 16 4 evm.TU.Chr1.1235 7.59 8.3 74.4% feature · violin
Cluster 16 5 evm.TU.Chr8.943 8.67 7.8 69.8% feature · violin
Cluster 16 6 evm.TU.Chr12.264 13.29 7.6 67.4% feature · violin
Cluster 16 7 evm.TU.Chr6.1389 9.33 7.6 67.4% feature · violin
Cluster 16 8 evm.TU.Chr3.1427 8.89 7.3 65.1% feature · violin
Cluster 16 9 evm.TU.Chr4.487 6.94 7.2 65.1% feature · violin
Cluster 16 10 evm.TU.Chr14.553 10.14 7.1 62.8% feature · violin
Cluster 16 11 evm.TU.Chr9.1507 5.47 6.8 65.1% feature · violin
Cluster 16 12 evm.TU.Chr11.628 7.39 6.7 60.5% feature · violin
Cluster 16 13 evm.TU.Chr3.783 4.07 6.6 69.8% feature · violin
Cluster 16 14 evm.TU.Chr14.372 6.43 6.4 58.1% feature · violin
Cluster 16 15 evm.TU.Chr8.1448 9.09 6.3 55.8% feature · violin
Cluster 16 16 evm.TU.Chr6.1326 4.55 6.1 60.5% feature · violin
Cluster 16 17 evm.TU.Chr3.739 4.96 5.8 55.8% feature · violin
Cluster 16 18 evm.TU.Chr10.691 8.70 5.8 51.2% feature · violin
Cluster 16 19 evm.TU.Chr8.1604 8.37 5.7 51.2% feature · violin
Cluster 16 20 evm.TU.Chr4.874 5.30 5.7 53.5% feature · violin
Cluster 16 21 evm.TU.Chr3.257 11.34 5.5 48.8% feature · violin
Cluster 16 22 evm.TU.Chr5.481 7.30 5.4 48.8% feature · violin
Cluster 16 23 evm.TU.Chr8.1169 2.75 5.4 72.1% feature · violin
Cluster 16 24 evm.TU.Chr3.1157 10.58 5.3 46.5% feature · violin
Cluster 16 25 evm.TU.Chr3.1430 5.14 5.1 48.8% feature · violin
Cluster 16 26 evm.TU.Chr6.1429 5.03 5.1 48.8% feature · violin
Cluster 16 27 evm.TU.Chr5.640 3.24 4.9 55.8% feature · violin
Cluster 16 28 evm.TU.Chr12.865 3.01 4.8 58.1% feature · violin
Cluster 16 29 evm.TU.Chr4.1715 2.25 4.8 72.1% feature · violin
Cluster 16 30 evm.TU.Chr12.415 3.24 4.7 53.5% feature · violin
Cluster 16 31 evm.TU.Chr3.494_evm.TU.Chr3.495 6.41 4.6 41.9% feature · violin
Cluster 16 32 evm.TU.Chr2.216 5.51 4.5 41.9% feature · violin
Cluster 16 33 evm.TU.Chr3.355 3.87 4.3 44.2% feature · violin
Cluster 16 34 evm.TU.Chr3.1158 12.64 4.2 37.2% feature · violin
Cluster 16 35 evm.TU.Chr13.843 9.57 4.2 37.2% feature · violin
Cluster 16 36 evm.TU.Chr6.973 6.83 4.1 37.2% feature · violin
Cluster 16 37 evm.TU.Chr10.1444 2.58 4.1 51.2% feature · violin
Cluster 16 38 evm.TU.Chr4.1097 7.36 3.9 34.9% feature · violin
Cluster 16 39 evm.TU.Chr5.788 4.65 3.9 37.2% feature · violin
Cluster 16 40 evm.TU.Chr5.1220 6.32 3.9 34.9% feature · violin
Cluster 16 41 evm.TU.Chr6.820 6.37 3.9 34.9% feature · violin
Cluster 16 42 evm.TU.Chr6.1402 5.86 3.8 37.2% feature · violin
Cluster 16 43 evm.TU.Chr8.1418 5.01 3.7 34.9% feature · violin
Cluster 16 44 evm.TU.Chr7.659 4.47 3.6 34.9% feature · violin
Cluster 16 45 evm.TU.Chr4.671 6.69 3.6 32.6% feature · violin
Cluster 16 46 evm.TU.Chr5.1201 5.94 3.6 32.6% feature · violin
Cluster 16 47 evm.TU.Chr2.814 5.23 3.5 32.6% feature · violin
Cluster 16 48 evm.TU.Chr2.1094 2.63 3.5 41.9% feature · violin
Cluster 16 49 evm.TU.Chr10.664 2.60 3.5 41.9% feature · violin
Cluster 16 50 evm.TU.Chr14.706 3.18 3.5 37.2% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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