Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr7.1155 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 17 1 evm.TU.Chr7.581 9.88 11.3 87.5% feature · violin
Cluster 17 2 evm.TU.Chr7.425 4.15 8.5 82.1% feature · violin
Cluster 17 3 evm.TU.Chr7.585 6.66 8.4 67.9% feature · violin
Cluster 17 4 evm.TU.Chr7.1155 6.64 8.3 66.1% feature · violin
Cluster 17 5 evm.TU.Chr7.1122 4.53 8.3 75.0% feature · violin
Cluster 17 6 evm.TU.Chr6.1064 8.16 8.2 64.3% feature · violin
Cluster 17 7 evm.TU.Chr13.12 7.57 8.1 64.3% feature · violin
Cluster 17 8 evm.TU.Chr7.297 4.76 7.3 62.5% feature · violin
Cluster 17 9 evm.TU.Chr3.263 5.24 7.3 60.7% feature · violin
Cluster 17 10 evm.TU.Chr6.185 7.02 7.2 57.1% feature · violin
Cluster 17 11 evm.TU.Chr4.682 2.77 7.1 76.8% feature · violin
Cluster 17 12 evm.TU.Chr8.860 3.79 7.0 64.3% feature · violin
Cluster 17 13 evm.TU.Chr4.1478 3.95 7.0 67.9% feature · violin
Cluster 17 14 evm.TU.Chr10.1356 3.54 6.6 66.1% feature · violin
Cluster 17 15 evm.TU.Chr5.416_evm.TU.Chr5.418 5.33 6.5 53.6% feature · violin
Cluster 17 16 evm.TU.Chr1.1291 5.47 6.1 50.0% feature · violin
Cluster 17 17 evm.TU.Chr12.1009 3.01 5.8 58.9% feature · violin
Cluster 17 18 evm.TU.Chr10.212 2.92 5.7 62.5% feature · violin
Cluster 17 19 evm.TU.Chr5.757 5.36 5.4 44.6% feature · violin
Cluster 17 20 evm.TU.Chr3.117 4.24 5.4 46.4% feature · violin
Cluster 17 21 evm.TU.Chr10.1682 5.86 5.3 42.9% feature · violin
Cluster 17 22 evm.TU.Chr2.617 8.56 5.3 41.1% feature · violin
Cluster 17 23 evm.TU.Chr7.377 3.35 5.1 48.2% feature · violin
Cluster 17 24 evm.TU.Chr8.668 4.06 5.1 46.4% feature · violin
Cluster 17 25 evm.TU.Chr11.514 2.34 4.8 57.1% feature · violin
Cluster 17 26 evm.TU.Chr8.1558 2.11 4.8 60.7% feature · violin
Cluster 17 27 evm.TU.Chr2.1276 1.49 4.7 80.4% feature · violin
Cluster 17 28 evm.TU.Chr6.1216 1.86 4.5 64.3% feature · violin
Cluster 17 29 evm.TU.Chr1.1168 5.01 4.4 35.7% feature · violin
Cluster 17 30 evm.TU.Chr3.511 4.88 4.3 35.7% feature · violin
Cluster 17 31 evm.TU.Chr13.765 5.10 4.2 33.9% feature · violin
Cluster 17 32 evm.TU.Chr12.1338 1.85 4.1 62.5% feature · violin
Cluster 17 33 evm.TU.Chr5.1059 4.65 4.1 33.9% feature · violin
Cluster 17 34 evm.TU.Chr4.1465 6.32 4.1 32.1% feature · violin
Cluster 17 35 evm.TU.Chr3.818 6.33 3.8 30.4% feature · violin
Cluster 17 36 evm.TU.Chr1.882 5.71 3.8 30.4% feature · violin
Cluster 17 37 evm.TU.Chr9.899 1.97 3.8 50.0% feature · violin
Cluster 17 38 evm.TU.Chr11.618 1.61 3.7 58.9% feature · violin
Cluster 17 39 evm.TU.Chr6.357 1.60 3.7 87.5% feature · violin
Cluster 17 40 evm.TU.Chr8.1510 3.74 3.6 32.1% feature · violin
Cluster 17 41 evm.TU.Chr8.1355 1.81 3.6 51.8% feature · violin
Cluster 17 42 evm.TU.Chr4.649 2.13 3.6 42.9% feature · violin
Cluster 17 43 evm.TU.Chr7.897 0.72 3.6 78.6% feature · violin
Cluster 17 44 evm.TU.Chr10.1536 2.41 3.6 39.3% feature · violin
Cluster 17 45 evm.TU.Chr9.162 2.87 3.4 33.9% feature · violin
Cluster 17 46 evm.TU.Chr8.447 1.80 3.4 48.2% feature · violin
Cluster 17 47 evm.TU.Chr1.878 7.48 3.4 26.8% feature · violin
Cluster 17 48 evm.TU.Chr3.242 1.73 3.4 48.2% feature · violin
Cluster 17 49 evm.TU.Chr3.391 3.41 3.4 30.4% feature · violin
Cluster 17 50 evm.TU.Chr2.787 4.00 3.3 28.6% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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