Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr7.433 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 18 1 evm.TU.Chr14.687 6.38 16.8 91.9% feature · violin
Cluster 18 2 evm.TU.Chr3.1366_evm.TU.Chr3.1367 4.75 16.8 100.0% feature · violin
Cluster 18 3 evm.TU.Chr4.260 5.68 15.9 87.4% feature · violin
Cluster 18 4 evm.TU.Chr9.96 6.65 14.3 74.1% feature · violin
Cluster 18 5 evm.TU.Chr6.374 4.15 13.7 85.9% feature · violin
Cluster 18 6 evm.TU.Chr7.433 4.44 13.2 78.5% feature · violin
Cluster 18 7 evm.TU.Chr12.963 4.51 12.8 75.6% feature · violin
Cluster 18 8 evm.TU.Chr4.524 3.96 12.1 75.6% feature · violin
Cluster 18 9 evm.TU.Chr3.417 3.53 12.1 85.9% feature · violin
Cluster 18 10 evm.TU.Chr7.362 3.55 11.8 77.0% feature · violin
Cluster 18 11 evm.TU.Chr10.1678 4.43 11.7 68.1% feature · violin
Cluster 18 12 evm.TU.Chr9.447 3.49 11.6 78.5% feature · violin
Cluster 18 13 evm.TU.Chr12.334 2.75 11.1 89.6% feature · violin
Cluster 18 14 evm.TU.Chr11.1058 3.81 10.8 66.7% feature · violin
Cluster 18 15 evm.TU.Chr12.948 4.09 10.1 59.3% feature · violin
Cluster 18 16 evm.TU.Chr9.1046 2.30 10.0 85.2% feature · violin
Cluster 18 17 evm.TU.Chr6.366_evm.TU.Chr6.367 3.91 9.8 58.5% feature · violin
Cluster 18 18 evm.TU.Chr1.917 1.92 9.6 93.3% feature · violin
Cluster 18 19 evm.TU.Chr12.1235 5.77 9.5 49.6% feature · violin
Cluster 18 20 evm.TU.Chr13.619 3.43 9.4 60.0% feature · violin
Cluster 18 21 evm.TU.Chr5.438 3.46 9.3 58.5% feature · violin
Cluster 18 22 evm.TU.Chr12.947 3.55 9.0 56.3% feature · violin
Cluster 18 23 evm.TU.Chr3.1005 3.30 8.9 57.8% feature · violin
Cluster 18 24 evm.TU.Chr4.1478 2.88 8.9 66.7% feature · violin
Cluster 18 25 evm.TU.Chr1.911 2.47 8.9 77.0% feature · violin
Cluster 18 26 evm.TU.Chr6.1065 4.48 8.7 48.1% feature · violin
Cluster 18 27 evm.TU.Chr5.1285 5.85 8.7 45.2% feature · violin
Cluster 18 28 evm.TU.Chr7.188 2.01 8.7 88.9% feature · violin
Cluster 18 29 evm.TU.Chr8.1350 7.43 8.6 43.7% feature · violin
Cluster 18 30 evm.TU.Chr7.294 3.45 8.6 56.3% feature · violin
Cluster 18 31 evm.TU.Chr4.1511 6.56 8.5 43.7% feature · violin
Cluster 18 32 evm.TU.Chr5.431 3.14 8.3 54.8% feature · violin
Cluster 18 33 evm.TU.Chr7.425 2.58 8.3 66.7% feature · violin
Cluster 18 34 evm.TU.Chr13.144 2.36 8.2 69.6% feature · violin
Cluster 18 35 evm.TU.Chr2.747 2.71 8.1 62.2% feature · violin
Cluster 18 36 evm.TU.Chr5.235 2.15 7.9 73.3% feature · violin
Cluster 18 37 evm.TU.Chr10.1356 2.59 7.8 58.5% feature · violin
Cluster 18 38 evm.TU.Chr7.733 1.87 7.7 79.3% feature · violin
Cluster 18 39 evm.TU.Chr8.518 2.39 7.4 66.7% feature · violin
Cluster 18 40 evm.TU.Chr9.102 2.70 7.4 53.3% feature · violin
Cluster 18 41 evm.TU.Chr3.1130 4.01 7.3 41.5% feature · violin
Cluster 18 42 evm.TU.Chr7.248 3.58 7.1 42.2% feature · violin
Cluster 18 43 evm.TU.Chr1.1083 1.70 7.0 80.0% feature · violin
Cluster 18 44 evm.TU.Chr7.478 2.03 6.9 66.7% feature · violin
Cluster 18 45 evm.TU.Chr10.254 1.09 6.8 93.3% feature · violin
Cluster 18 46 evm.TU.Chr10.212 2.34 6.7 53.3% feature · violin
Cluster 18 47 evm.TU.Chr10.1677 4.04 6.5 36.3% feature · violin
Cluster 18 48 evm.TU.Chr4.898 1.89 6.5 68.1% feature · violin
Cluster 18 49 evm.TU.Chr10.606 3.68 6.4 37.0% feature · violin
Cluster 18 50 evm.TU.Chr8.692 2.01 6.4 60.0% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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