Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that evm.TU.Chr9.1356 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 23 1 evm.TU.Chr3.1037 8.23 14.1 90.5% feature · violin
Cluster 23 2 evm.TU.Chr6.1145 6.86 13.7 90.5% feature · violin
Cluster 23 3 evm.TU.Chr11.1079 8.70 12.7 81.0% feature · violin
Cluster 23 4 evm.TU.Chr7.1122 5.32 12.5 90.5% feature · violin
Cluster 23 5 evm.TU.Chr8.1598 7.97 12.4 79.8% feature · violin
Cluster 23 6 evm.TU.Chr4.1715 4.09 12.4 92.9% feature · violin
Cluster 23 7 evm.TU.Chr8.1295 5.86 12.3 83.3% feature · violin
Cluster 23 8 evm.TU.Chr5.60 9.61 12.2 78.6% feature · violin
Cluster 23 9 evm.TU.Chr6.1326 5.43 11.5 78.6% feature · violin
Cluster 23 10 evm.TU.Chr9.1507 6.59 11.4 76.2% feature · violin
Cluster 23 11 evm.TU.Chr9.1356 10.11 11.4 72.6% feature · violin
Cluster 23 12 evm.TU.Chr6.1523 9.23 10.8 69.0% feature · violin
Cluster 23 13 evm.TU.Chr2.1094 5.04 10.8 75.0% feature · violin
Cluster 23 14 evm.TU.Chr10.1399 3.63 10.5 84.5% feature · violin
Cluster 23 15 evm.TU.Chr8.262 10.17 10.3 65.5% feature · violin
Cluster 23 16 evm.TU.Chr14.516 4.73 9.7 67.9% feature · violin
Cluster 23 17 evm.TU.Chr3.783 3.96 9.3 71.4% feature · violin
Cluster 23 18 evm.TU.Chr9.536 8.49 9.2 58.3% feature · violin
Cluster 23 19 evm.TU.Chr4.874 5.63 9.1 60.7% feature · violin
Cluster 23 20 evm.TU.Chr5.165 7.08 8.7 56.0% feature · violin
Cluster 23 21 evm.TU.Chr5.151 3.86 8.6 66.7% feature · violin
Cluster 23 22 evm.TU.Chr2.216 6.27 8.4 54.8% feature · violin
Cluster 23 23 evm.TU.Chr8.1493 7.90 8.4 54.8% feature · violin
Cluster 23 24 evm.TU.Chr3.739 4.77 8.2 57.1% feature · violin
Cluster 23 25 evm.TU.Chr8.1169 3.05 8.2 72.6% feature · violin
Cluster 23 26 evm.TU.Chr10.292 8.18 8.2 52.4% feature · violin
Cluster 23 27 evm.TU.Chr8.943 7.42 8.2 52.4% feature · violin
Cluster 23 28 evm.TU.Chr3.272 7.58 8.1 52.4% feature · violin
Cluster 23 29 evm.TU.Chr10.1405 4.85 8.1 56.0% feature · violin
Cluster 23 30 evm.TU.Chr3.1340 2.47 7.6 83.3% feature · violin
Cluster 23 31 evm.TU.Chr13.171 2.79 7.4 67.9% feature · violin
Cluster 23 32 evm.TU.Chr8.1597 6.97 7.0 45.2% feature · violin
Cluster 23 33 evm.TU.Chr5.1220 7.61 6.9 44.0% feature · violin
Cluster 23 34 evm.TU.Chr8.53 2.84 6.7 59.5% feature · violin
Cluster 23 35 evm.TU.Chr5.123 7.92 6.7 42.9% feature · violin
Cluster 23 36 evm.TU.Chr8.1165 2.77 6.7 61.9% feature · violin
Cluster 23 37 evm.TU.Chr12.1126 8.63 6.6 41.7% feature · violin
Cluster 23 38 evm.TU.Chr14.706 3.85 6.5 47.6% feature · violin
Cluster 23 39 evm.TU.Chr3.1430 5.98 6.5 44.0% feature · violin
Cluster 23 40 evm.TU.Chr7.711 1.73 6.4 90.5% feature · violin
Cluster 23 41 evm.TU.Chr4.682 2.15 6.3 75.0% feature · violin
Cluster 23 42 evm.TU.Chr11.72 2.34 6.3 67.9% feature · violin
Cluster 23 43 evm.TU.Chr9.89 6.53 6.3 40.5% feature · violin
Cluster 23 44 evm.TU.Chr9.1590 4.99 6.1 41.7% feature · violin
Cluster 23 45 evm.TU.Chr6.948 6.24 6.1 39.3% feature · violin
Cluster 23 46 evm.TU.Chr9.1132 4.30 6.0 41.7% feature · violin
Cluster 23 47 evm.TU.Chr4.671 7.19 5.9 38.1% feature · violin
Cluster 23 48 evm.TU.Chr12.851 8.86 5.8 36.9% feature · violin
Cluster 23 49 evm.TU.Chr13.678 7.61 5.8 36.9% feature · violin
Cluster 23 50 evm.TU.Chr10.664 2.86 5.7 47.6% feature · violin

The accession map for this dataset has not been built, so genes are shown with the identifiers their own data files use.

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