Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g12999.t1|CALM_METSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 35 1 XP_065665248.1 (g7871.t1) 10.62 30.3 99.7% feature · violin
Cluster 35 2 XP_065653399.1 (g25710.t1) 7.85 28.5 97.4% feature · violin
Cluster 35 3 g33076.t1|TBA1C_MOUSE not mapped 7.46 27.2 92.3% feature · violin
Cluster 35 4 g33330.t1 not mapped 9.50 27.1 89.8% feature · violin
Cluster 35 5 g12551.t1 not mapped 6.85 26.6 91.4% feature · violin
Cluster 35 6 XP_065665852.1 (g11313.t1) 6.09 24.9 91.7% feature · violin
Cluster 35 7 g6690.t1 not mapped 6.05 24.3 87.2% feature · violin
Cluster 35 8 g12999.t1|CALM_METSE not mapped 1.95 24.1 95.8% feature · violin
Cluster 35 9 g6753.t1|TBB4B_MOUSE not mapped 4.61 23.2 88.8% feature · violin
Cluster 35 10 XP_065656624.1 (g32592.t1|SC5A7_CAEEL) 8.82 21.5 71.2% feature · violin
Cluster 35 11 XP_065657324.1 (g1379.t1|CALB1_CHICK) 6.19 21.0 72.8% feature · violin
Cluster 35 12 g21086.t1|NCAH_DROME not mapped 2.65 20.3 83.4% feature · violin
Cluster 35 13 g27032.t1 not mapped 7.43 19.9 67.7% feature · violin
Cluster 35 14 XP_065660988.1 (g33343.t1) 7.05 19.6 67.4% feature · violin
Cluster 35 15 XP_065669351.1 (g25127.t1|DMTA2_MONAL) 6.68 19.3 65.2% feature · violin
Cluster 35 16 g28682.t1|CALM_METSE not mapped 3.66 19.2 79.6% feature · violin
Cluster 35 17 g20079.t1 not mapped 4.93 19.1 68.7% feature · violin
Cluster 35 18 XP_065665283.1 (g6538.t1) 7.47 19.1 63.6% feature · violin
Cluster 35 19 XP_065672925.1 (g20647.t1|USOM5_ACRMI) 6.92 19.0 63.9% feature · violin
Cluster 35 20 g15487.t1|CALM_SCHPO not mapped 7.46 18.3 61.0% feature · violin
Cluster 35 21 XP_065676018.1 (g6751.t1|TBB4_XENLA) 5.01 18.2 66.5% feature · violin
Cluster 35 22 g24271.t1|TBA1_PARLI not mapped 3.08 17.6 79.6% feature · violin
Cluster 35 23 XP_065649132.1 (g24667.t1|FAXC_MOUSE) 1.60 17.2 85.3% feature · violin
Cluster 35 24 g3704.t1|FRIS_LYMST not mapped 1.32 17.0 94.9% feature · violin
Cluster 35 25 g30274.t1 not mapped 5.09 16.7 58.8% feature · violin
Cluster 35 26 XP_065672592.1 (g32494.t2) 2.80 16.5 72.2% feature · violin
Cluster 35 27 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 1.99 16.3 81.5% feature · violin
Cluster 35 28 g1075.t1 not mapped 5.17 15.7 55.0% feature · violin
Cluster 35 29 g3532.t1|NECX_APLCA not mapped 5.84 15.4 53.0% feature · violin
Cluster 35 30 XP_065657002.1 (g24174.t1) 8.68 15.3 50.8% feature · violin
Cluster 35 31 XP_065665123.1 (g15493.t1|OFUT2_MOUSE) 4.51 14.8 56.5% feature · violin
Cluster 35 32 g23868.t1 not mapped 7.58 14.7 49.5% feature · violin
Cluster 35 33 g27140.t1|DIRA2_HUMAN not mapped 7.30 14.7 49.2% feature · violin
Cluster 35 34 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 4.19 14.6 54.3% feature · violin
Cluster 35 35 XP_065644365.1 (g25762.t1|A4_CAEEL) 1.90 14.2 82.1% feature · violin
Cluster 35 36 XP_065670015.1 (g949.t1|PKD2_BOVIN) 4.06 13.7 54.6% feature · violin
Cluster 35 37 XP_065663510.1 (g23948.t1|T23O_TRICA) 7.30 13.6 45.4% feature · violin
Cluster 35 38 g30825.t1 not mapped 7.35 13.5 45.4% feature · violin
Cluster 35 39 g28847.t1|TBA3_RAT not mapped 1.34 13.3 76.4% feature · violin
Cluster 35 40 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 2.49 13.3 62.6% feature · violin
Cluster 35 41 XP_065662156.1 (g3414.t2|SCN8A_HUMAN) 5.14 13.2 46.6% feature · violin
Cluster 35 42 g12505.t1 not mapped 6.22 13.1 44.7% feature · violin
Cluster 35 43 XP_065657198.1 (g24768.t1|HMCN1_MOUSE) 4.45 13.0 47.3% feature · violin
Cluster 35 44 XP_065659203.1 (g3974.t1|GNPTG_MOUSE) 4.66 12.4 45.4% feature · violin
Cluster 35 45 XP_065669747.1 (g4435.t1|NECB_HYDVU) 1.99 12.4 64.2% feature · violin
Cluster 35 46 XP_065673276.1 (g804.t1|MARH4_HUMAN) 4.80 12.4 43.8% feature · violin
Cluster 35 47 XP_065665090.1 (g6839.t1|HSP70_HYDVU) 2.31 12.3 61.3% feature · violin
Cluster 35 48 XP_065665931.1 (g33087.t1|AGRIN_HUMAN) 5.84 12.1 41.2% feature · violin
Cluster 35 49 XP_065649685.1 (g2140.t1|EGR1_XENTR) 1.04 12.0 78.0% feature · violin
Cluster 35 50 g19229.t1 not mapped 4.57 11.9 42.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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