Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g15634.t1|KCP4_PINMG is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 g9819.t1|CSL3_ONCKE not mapped 11.41 37.1 100.0% feature · violin
Cluster 12 2 g24045.t1|APX1_HYDVD not mapped 12.05 37.1 100.0% feature · violin
Cluster 12 3 XP_065654191.1 (g10257.t1|IABF_STRAW) 12.06 36.6 98.7% feature · violin
Cluster 12 4 g17994.t1|TBA_XENLA not mapped 6.59 36.3 98.9% feature · violin
Cluster 12 5 XP_065660410.1 (g26562.t1) 12.03 36.1 97.4% feature · violin
Cluster 12 6 XP_065645044.1 (g3709.t1) 6.65 35.8 98.5% feature · violin
Cluster 12 7 XP_065667032.1 (g9821.t1|SAL_SILAS) 11.91 35.4 95.5% feature · violin
Cluster 12 8 g19689.t1|ELEL_ECHLU not mapped 11.52 35.1 94.9% feature · violin
Cluster 12 9 XP_065668431.1 (g13178.t1) 12.46 35.0 94.4% feature · violin
Cluster 12 10 g27079.t1 not mapped 10.29 34.7 93.8% feature · violin
Cluster 12 11 g1751.t1|APX1_HYDVD not mapped 11.76 34.4 92.9% feature · violin
Cluster 12 12 g23753.t1|WAK3_ARATH not mapped 10.55 33.9 91.4% feature · violin
Cluster 12 13 XP_065643955.1 (g28029.t1) 5.69 33.7 94.2% feature · violin
Cluster 12 14 XP_065648490.1 (g16882.t1) 9.54 33.4 90.4% feature · violin
Cluster 12 15 XP_065643194.1 (g1771.t1|TENA_DROME) 9.48 33.3 90.1% feature · violin
Cluster 12 16 XP_065662324.1 (g30087.t1|TEF_CHICK) 9.37 33.3 90.1% feature · violin
Cluster 12 17 XP_065661978.1 (g24582.t1) 4.52 33.2 95.3% feature · violin
Cluster 12 18 g27806.t1 not mapped 8.24 33.1 90.1% feature · violin
Cluster 12 19 XP_065653188.1 (g3660.t1) 5.22 32.9 97.0% feature · violin
Cluster 12 20 XP_065674590.1 (g17914.t1|FCA1_TRYRA) 2.74 32.6 99.6% feature · violin
Cluster 12 21 XP_065659774.1 (g22114.t1) 4.32 32.5 96.1% feature · violin
Cluster 12 22 XP_065647173.1 (g14706.t1|TNKS1_MOUSE) 9.45 32.5 87.8% feature · violin
Cluster 12 23 XP_065646539.1 (g16111.t1) 10.65 32.4 87.4% feature · violin
Cluster 12 24 XP_065644974.1 (g15634.t1|KCP4_PINMG) 6.82 32.3 88.7% feature · violin
Cluster 12 25 g33747.t1|TENX_HUMAN not mapped 7.75 32.0 87.4% feature · violin
Cluster 12 26 XP_065646328.1 (g2198.t1|K1958_HUMAN) 7.81 32.0 86.9% feature · violin
Cluster 12 27 XP_065673055.1 (g30674.t1|CHAC1_RAT) 5.40 31.7 93.1% feature · violin
Cluster 12 28 g4326.t1 not mapped 6.40 31.3 86.5% feature · violin
Cluster 12 29 XP_065671145.1 (g15884.t1) 6.71 30.2 83.7% feature · violin
Cluster 12 30 XP_065662238.1 (g248.t1) 5.54 30.0 83.9% feature · violin
Cluster 12 31 XP_065659093.1 (g31445.t1) 6.11 30.0 84.2% feature · violin
Cluster 12 32 g10349.t1 not mapped 7.92 29.7 80.7% feature · violin
Cluster 12 33 g15631.t1|VP302_LYCMC not mapped 11.66 29.6 79.9% feature · violin
Cluster 12 34 g19688.t1|LPHN_DROMO not mapped 11.68 29.3 79.0% feature · violin
Cluster 12 35 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 3.58 29.1 95.3% feature · violin
Cluster 12 36 g18808.t1 not mapped 7.88 28.8 78.6% feature · violin
Cluster 12 37 XP_065644955.1 (g15630.t1|KCP4_PINMG) 11.90 28.7 77.5% feature · violin
Cluster 12 38 XP_065662942.1 (g22802.t1) 9.40 28.7 77.7% feature · violin
Cluster 12 39 XP_065647209.1 (g12445.t1|PFM_CHAGB) 10.63 28.5 77.1% feature · violin
Cluster 12 40 XP_065668478.1 (g33661.t1|CPEB1_PONAB) 3.57 28.5 87.6% feature · violin
Cluster 12 41 XP_065656885.1 (g5179.t1) 3.85 28.4 95.3% feature · violin
Cluster 12 42 XP_065659421.1 (g2033.t1) 7.09 28.3 77.5% feature · violin
Cluster 12 43 XP_065648489.1 (g16881.t1) 5.74 28.2 79.4% feature · violin
Cluster 12 44 XP_065648007.1 (g24990.t1) 9.49 28.0 75.6% feature · violin
Cluster 12 45 g6838.t1 not mapped 6.39 27.8 76.7% feature · violin
Cluster 12 46 g20806.t1 not mapped 9.87 27.6 74.5% feature · violin
Cluster 12 47 XP_065655626.1 (g1299.t1) 9.17 27.1 73.2% feature · violin
Cluster 12 48 g18449.t1|PHLB2_HUMAN not mapped 4.29 27.0 80.1% feature · violin
Cluster 12 49 XP_065645046.1 (g10682.t1|ANTA_HYDVU) 8.67 26.9 73.2% feature · violin
Cluster 12 50 XP_065644365.1 (g25762.t1|A4_CAEEL) 2.81 26.9 97.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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