Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g15667.t1|P4HA1_RAT is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 21 1 XP_065661157.1 (g26846.t1) 8.79 29.3 99.3% feature · violin
Cluster 21 2 XP_065663400.1 (g24329.t1|LWA_HYDEC) 10.69 29.3 99.7% feature · violin
Cluster 21 3 XP_065653399.1 (g25710.t1) 8.26 28.8 99.7% feature · violin
Cluster 21 4 XP_065665852.1 (g11313.t1) 7.79 28.3 99.7% feature · violin
Cluster 21 5 XP_065670346.1 (g10296.t1|TIMP3_SCYTO) 9.55 28.1 95.3% feature · violin
Cluster 21 6 g10299.t1|TIMP3_HORSE not mapped 9.18 27.6 93.7% feature · violin
Cluster 21 7 g18705.t1 not mapped 11.28 24.7 83.0% feature · violin
Cluster 21 8 XP_065657198.1 (g24768.t1|HMCN1_MOUSE) 7.02 24.7 85.0% feature · violin
Cluster 21 9 g6690.t1 not mapped 5.86 24.2 89.0% feature · violin
Cluster 21 10 XP_065656945.1 (g19645.t1) 7.97 23.1 78.7% feature · violin
Cluster 21 11 g12976.t1 not mapped 7.15 23.0 79.0% feature · violin
Cluster 21 12 XP_065663658.1 (g23552.t1|RNMT_MYCLE) 10.25 22.5 75.7% feature · violin
Cluster 21 13 XP_065663761.1 (g1965.t1|SPAN_STRPU) 10.98 21.9 73.7% feature · violin
Cluster 21 14 XP_065649132.1 (g24667.t1|FAXC_MOUSE) 2.23 21.5 95.3% feature · violin
Cluster 21 15 g33076.t1|TBA1C_MOUSE not mapped 5.16 21.5 81.3% feature · violin
Cluster 21 16 g28682.t1|CALM_METSE not mapped 3.63 21.4 90.0% feature · violin
Cluster 21 17 XP_065669876.1 (g28248.t1|KLKB1_RAT) 11.52 21.2 71.3% feature · violin
Cluster 21 18 g26087.t1|NDF1_DANRE not mapped 9.34 21.2 71.3% feature · violin
Cluster 21 19 XP_065667062.1 (g31209.t1|BETS_RHIML) 10.41 20.6 69.3% feature · violin
Cluster 21 20 g24271.t1|TBA1_PARLI not mapped 3.43 19.8 87.0% feature · violin
Cluster 21 21 g6753.t1|TBB4B_MOUSE not mapped 3.70 19.6 84.7% feature · violin
Cluster 21 22 XP_065651557.1 (g15667.t1|P4HA1_RAT) 4.60 18.8 69.3% feature · violin
Cluster 21 23 g12551.t1 not mapped 4.88 18.2 68.3% feature · violin
Cluster 21 24 XP_065676018.1 (g6751.t1|TBB4_XENLA) 4.44 18.0 69.0% feature · violin
Cluster 21 25 XP_065665906.1 (g628.t1) 7.75 17.7 60.0% feature · violin
Cluster 21 26 g27032.t1 not mapped 6.53 17.4 61.3% feature · violin
Cluster 21 27 XP_065643638.1 (g13730.t1|NCAH_DROME) 5.01 16.9 61.7% feature · violin
Cluster 21 28 XP_065653644.1 (g15291.t1|RLBP1_HUMAN) 5.41 16.7 59.3% feature · violin
Cluster 21 29 g28847.t1|TBA3_RAT not mapped 1.80 16.5 85.3% feature · violin
Cluster 21 30 XP_065654100.1 (g25164.t1) 5.52 16.5 58.0% feature · violin
Cluster 21 31 g30274.t1 not mapped 4.73 15.9 58.0% feature · violin
Cluster 21 32 XP_065646333.1 (g2192.t1|LMX1A_HUMAN) 4.37 15.1 57.0% feature · violin
Cluster 21 33 XP_065656156.1 (g18531.t1) 4.77 15.0 54.3% feature · violin
Cluster 21 34 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 4.03 14.3 54.7% feature · violin
Cluster 21 35 XP_065672592.1 (g32494.t2) 2.44 14.2 70.0% feature · violin
Cluster 21 36 gfp.t1 not mapped 4.57 14.1 52.3% feature · violin
Cluster 21 37 g22159.t1 not mapped 12.33 14.1 47.3% feature · violin
Cluster 21 38 XP_065655444.1 (g31869.t1|AA2BR_CHICK) 9.40 13.8 46.7% feature · violin
Cluster 21 39 g10380.t1|CDN1C_MOUSE not mapped 2.85 13.8 63.0% feature · violin
Cluster 21 40 g32519.t1 not mapped 2.99 13.6 61.0% feature · violin
Cluster 21 41 XP_065669535.1 (g20846.t1|VIAAT_XENLA) 7.92 13.4 45.3% feature · violin
Cluster 21 42 g24117.t1 not mapped 5.41 13.4 47.0% feature · violin
Cluster 21 43 XP_065669147.1 (g18882.t1|SYN2_MOUSE) 4.78 13.1 47.0% feature · violin
Cluster 21 44 g25040.t1 not mapped 4.84 12.9 48.0% feature · violin
Cluster 21 45 XP_065646806.1 (g17491.t1|DDAC_ENTAG) 5.84 12.9 45.3% feature · violin
Cluster 21 46 g12999.t1|CALM_METSE not mapped 0.82 12.9 88.7% feature · violin
Cluster 21 47 g10051.t1|HXD3_XENLA not mapped 4.41 12.5 46.0% feature · violin
Cluster 21 48 XP_065657324.1 (g1379.t1|CALB1_CHICK) 3.70 12.5 49.0% feature · violin
Cluster 21 49 XP_065661592.1 (g15690.t1|NAS13_CAEEL) 4.72 12.3 45.3% feature · violin
Cluster 21 50 g26349.t1 not mapped 4.24 12.1 45.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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