Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g17785.t1|ECE1_MOUSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 38 1 XP_065662060.1 (g4047.t1|CLSPN_HUMAN) 10.93 24.2 99.5% feature · violin
Cluster 38 2 XP_065665852.1 (g11313.t1) 7.72 23.4 100.0% feature · violin
Cluster 38 3 XP_065662057.1 (g4046.t1|PRFA_POLPE) 12.21 22.1 90.1% feature · violin
Cluster 38 4 g33076.t1|TBA1C_MOUSE not mapped 6.78 21.7 93.6% feature · violin
Cluster 38 5 g24271.t1|TBA1_PARLI not mapped 4.52 20.5 95.1% feature · violin
Cluster 38 6 XP_065665123.1 (g15493.t1|OFUT2_MOUSE) 6.37 20.5 86.7% feature · violin
Cluster 38 7 g28682.t1|CALM_METSE not mapped 4.44 20.3 93.6% feature · violin
Cluster 38 8 g12551.t1 not mapped 6.12 19.0 82.8% feature · violin
Cluster 38 9 XP_065649132.1 (g24667.t1|FAXC_MOUSE) 2.32 18.8 95.6% feature · violin
Cluster 38 10 g28847.t1|TBA3_RAT not mapped 2.59 18.8 93.6% feature · violin
Cluster 38 11 XP_065657324.1 (g1379.t1|CALB1_CHICK) 6.07 18.7 80.8% feature · violin
Cluster 38 12 XP_065653490.1 (g17785.t1|ECE1_MOUSE) 6.79 18.3 76.4% feature · violin
Cluster 38 13 g4656.t1 not mapped 8.54 17.2 70.9% feature · violin
Cluster 38 14 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 2.48 16.4 88.2% feature · violin
Cluster 38 15 g24535.t1 not mapped 7.50 16.2 67.5% feature · violin
Cluster 38 16 g6690.t1 not mapped 4.79 16.1 76.4% feature · violin
Cluster 38 17 XP_065673450.1 (g27436.t1) 7.25 15.2 63.1% feature · violin
Cluster 38 18 g10380.t1|CDN1C_MOUSE not mapped 3.75 15.2 73.4% feature · violin
Cluster 38 19 XP_065674982.1 (g20339.t1|NR1BA_DANRE) 9.18 15.2 62.1% feature · violin
Cluster 38 20 XP_065676018.1 (g6751.t1|TBB4_XENLA) 4.58 15.0 69.0% feature · violin
Cluster 38 21 XP_065653399.1 (g25710.t1) 4.85 14.6 69.5% feature · violin
Cluster 38 22 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 4.58 14.2 64.0% feature · violin
Cluster 38 23 XP_065658348.1 (g7355.t1) 2.73 14.2 74.9% feature · violin
Cluster 38 24 g6753.t1|TBB4B_MOUSE not mapped 3.32 14.0 77.3% feature · violin
Cluster 38 25 XP_065654100.1 (g25164.t1) 5.73 14.0 59.6% feature · violin
Cluster 38 26 g10051.t1|HXD3_XENLA not mapped 5.57 13.9 59.6% feature · violin
Cluster 38 27 XP_065661789.1 (g32297.t1|QPCTL_BOVIN) 4.70 13.7 62.6% feature · violin
Cluster 38 28 g3704.t1|FRIS_LYMST not mapped 1.12 13.2 94.1% feature · violin
Cluster 38 29 XP_065669147.1 (g18882.t1|SYN2_MOUSE) 5.45 13.1 56.2% feature · violin
Cluster 38 30 g28849.t1|TBA1D_BOVIN not mapped 2.02 12.7 76.4% feature · violin
Cluster 38 31 g28875.t1 not mapped 8.00 12.7 52.2% feature · violin
Cluster 38 32 g12999.t1|CALM_METSE not mapped 0.98 12.4 88.2% feature · violin
Cluster 38 33 g30274.t1 not mapped 4.57 11.8 52.7% feature · violin
Cluster 38 34 XP_065644365.1 (g25762.t1|A4_CAEEL) 1.91 11.7 82.8% feature · violin
Cluster 38 35 XP_065649685.1 (g2140.t1|EGR1_XENTR) 1.21 11.3 85.2% feature · violin
Cluster 38 36 XP_065670736.1 (g9835.t1|AZIN2_XENLA) 1.15 11.2 98.0% feature · violin
Cluster 38 37 XP_065648411.1 (g9693.t1|CAS4_EPHMU) 6.14 11.1 47.3% feature · violin
Cluster 38 38 XP_065648616.1 (g30239.t1|ASI4B_DANRE) 10.09 11.1 45.3% feature · violin
Cluster 38 39 XP_065654077.1 (g25156.t1) 5.51 11.1 47.3% feature · violin
Cluster 38 40 XP_065648239.1 (g29389.t1|CAS4_EPHMU) 5.82 10.9 46.8% feature · violin
Cluster 38 41 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 2.22 10.6 64.5% feature · violin
Cluster 38 42 XP_065672592.1 (g32494.t2) 2.29 10.6 65.5% feature · violin
Cluster 38 43 g900.t1|BTG1_CHICK not mapped 3.07 10.6 58.1% feature · violin
Cluster 38 44 gfp.t1 not mapped 4.23 10.4 47.8% feature · violin
Cluster 38 45 XP_065656486.1 (g31462.t1|ACT_HYDVU) 0.88 10.3 96.6% feature · violin
Cluster 38 46 XP_065664905.1 (g3299.t1|U390_DANRE) 2.73 9.7 58.1% feature · violin
Cluster 38 47 XP_065653644.1 (g15291.t1|RLBP1_HUMAN) 4.40 9.5 42.4% feature · violin
Cluster 38 48 XP_065644642.1 (g10581.t1|H2A_ONCMY) 2.26 9.5 63.1% feature · violin
Cluster 38 49 g21588.t1 not mapped 5.15 9.3 39.9% feature · violin
Cluster 38 50 XP_065645034.1 (g15636.t1|FRIS_LYMST) 1.09 9.2 93.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 19 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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