Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g20428.t1|VMO1_CHICK is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 33 1 XP_065669270.1 (g25080.t1) 11.21 26.8 100.0% feature · violin
Cluster 33 2 g25079.t1 not mapped 10.59 26.7 100.0% feature · violin
Cluster 33 3 g3318.t1 not mapped 10.09 26.2 96.0% feature · violin
Cluster 33 4 XP_065656185.1 (g7641.t1|TRAIP_MOUSE) 7.26 26.0 98.0% feature · violin
Cluster 33 5 XP_065651650.1 (g18331.t1) 8.29 25.9 97.6% feature · violin
Cluster 33 6 g31621.t1 not mapped 9.78 25.5 93.7% feature · violin
Cluster 33 7 XP_065648127.1 (g33299.t1) 8.90 25.2 94.8% feature · violin
Cluster 33 8 XP_065654027.1 (g9515.t1|VA5_VESMG) 10.16 24.9 91.7% feature · violin
Cluster 33 9 g18277.t1|GAPR1_HUMAN not mapped 7.08 24.9 94.0% feature · violin
Cluster 33 10 g32649.t1 not mapped 10.44 24.8 90.9% feature · violin
Cluster 33 11 g11062.t1|GAPR1_HUMAN not mapped 7.71 24.4 90.5% feature · violin
Cluster 33 12 XP_065674495.1 (g27455.t1|PLC_STAAE) 7.37 23.8 90.1% feature · violin
Cluster 33 13 XP_065656253.1 (g4308.t2|KALRN_MOUSE) 5.02 23.6 92.1% feature · violin
Cluster 33 14 g3220.t1|COMA_CONMA not mapped 5.89 23.5 93.3% feature · violin
Cluster 33 15 g3219.t1|COMA_CONMA not mapped 6.41 23.2 90.1% feature · violin
Cluster 33 16 g27920.t1|PRSS8_MOUSE not mapped 8.62 22.9 84.5% feature · violin
Cluster 33 17 XP_065666742.1 (g30334.t1|MUC5A_HUMAN) 6.60 22.6 86.5% feature · violin
Cluster 33 18 g32652.t1 not mapped 9.95 22.1 81.0% feature · violin
Cluster 33 19 XP_065657371.1 (g31007.t1) 8.46 22.0 81.0% feature · violin
Cluster 33 20 XP_065648125.1 (g25771.t1|ANTA_HYDVU) 6.90 21.6 83.3% feature · violin
Cluster 33 21 g7649.t1|MLP_ACRMI not mapped 7.43 21.3 79.4% feature · violin
Cluster 33 22 g12127.t1 not mapped 11.64 21.1 77.4% feature · violin
Cluster 33 23 XP_065674738.1 (g6182.t1) 7.05 21.0 78.6% feature · violin
Cluster 33 24 XP_065657270.1 (g33504.t1|PI4KA_BOVIN) 4.91 20.0 79.8% feature · violin
Cluster 33 25 XP_065655824.1 (g20428.t1|VMO1_CHICK) 7.59 19.5 72.6% feature · violin
Cluster 33 26 g622.t1 not mapped 6.04 19.2 73.0% feature · violin
Cluster 33 27 XP_065648126.1 (g25773.t1|ANTA_HYDVU) 6.27 19.1 74.2% feature · violin
Cluster 33 28 XP_065653767.1 (g26093.t1|HMCN1_HUMAN) 6.65 19.1 71.4% feature · violin
Cluster 33 29 XP_065652500.1 (g22063.t1|ATS6_HUMAN) 6.19 18.5 70.2% feature · violin
Cluster 33 30 XP_065655005.1 (g10778.t1|MUC5B_HUMAN) 4.98 18.2 72.2% feature · violin
Cluster 33 31 XP_065660957.1 (g13437.t1) 5.79 18.2 69.4% feature · violin
Cluster 33 32 g6139.t1|TSP2_MOUSE not mapped 5.29 18.0 71.0% feature · violin
Cluster 33 33 XP_065657273.1 (g33500.t1|PRY1_YEAST) 4.89 17.6 69.8% feature · violin
Cluster 33 34 g33794.t1|MYPH_ECHGR not mapped 2.87 17.5 82.1% feature · violin
Cluster 33 35 XP_065661695.1 (g32186.t1|LOX5_HUMAN) 6.23 17.3 65.1% feature · violin
Cluster 33 36 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 2.74 16.1 84.5% feature · violin
Cluster 33 37 g7895.t1|CTRC_MOUSE not mapped 3.45 15.6 80.6% feature · violin
Cluster 33 38 XP_065676074.1 (g6120.t1|KIF28_MOUSE) 4.02 15.2 63.1% feature · violin
Cluster 33 39 XP_065676855.1 (g16639.t1|DUS15_MOUSE) 5.34 15.1 59.5% feature · violin
Cluster 33 40 XP_065663813.1 (g20832.t1|DMBT1_RABIT) 4.65 14.9 59.5% feature · violin
Cluster 33 41 XP_065671405.1 (g31623.t1) 9.75 14.6 53.6% feature · violin
Cluster 33 42 XP_065655877.1 (g15139.t1|ENPP4_MOUSE) 5.19 14.2 54.8% feature · violin
Cluster 33 43 XP_065675062.1 (g1644.t1|NTPES_BACSU) 4.05 14.0 57.9% feature · violin
Cluster 33 44 g15015.t1|HE_PARLI not mapped 3.25 14.0 69.8% feature · violin
Cluster 33 45 g5524.t1 not mapped 5.76 13.6 51.6% feature · violin
Cluster 33 46 g7130.t1 not mapped 8.35 13.6 50.4% feature · violin
Cluster 33 47 XP_065673406.1 (g12478.t1|GAPR1_MOUSE) 5.90 13.3 50.4% feature · violin
Cluster 33 48 XP_065646333.1 (g2192.t1|LMX1A_HUMAN) 3.75 13.1 55.6% feature · violin
Cluster 33 49 XP_065646264.1 (g24360.t1|CALUB_DANRE) 1.72 12.9 76.2% feature · violin
Cluster 33 50 XP_065652593.1 (g28795.t2) 5.12 12.8 49.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 19 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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