Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g21784.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 32 1 g27651.t1 not mapped 5.46 42.4 97.2% feature · violin
Cluster 32 2 g33051.t1 not mapped 6.85 42.3 100.0% feature · violin
Cluster 32 3 XP_065670390.1 (g10044.t2) 5.57 40.8 94.7% feature · violin
Cluster 32 4 g21784.t1 not mapped 5.93 40.7 89.9% feature · violin
Cluster 32 5 XP_065662151.1 (g3411.t1) 5.65 40.5 90.1% feature · violin
Cluster 32 6 XP_065644346.1 (g25743.t1) 5.65 40.1 96.0% feature · violin
Cluster 32 7 g33262.t1|PPIB_BOVIN not mapped 3.63 39.7 93.0% feature · violin
Cluster 32 8 g2661.t1|CO5A1_CRILO not mapped 6.00 39.6 94.8% feature · violin
Cluster 32 9 XP_065652206.1 (g2461.t1|PAX2A_DANRE) 5.25 39.5 88.0% feature · violin
Cluster 32 10 g11572.t1|CO5A1_CRILO not mapped 5.33 39.2 95.1% feature · violin
Cluster 32 11 XP_065657157.1 (g24822.t1|CALR_RABIT) 1.18 37.9 100.0% feature · violin
Cluster 32 12 XP_065649943.1 (g19153.t1|TXD12_EPICO) 5.29 37.3 83.6% feature · violin
Cluster 32 13 g17953.t1|COHA1_HUMAN not mapped 5.53 36.9 87.7% feature · violin
Cluster 32 14 XP_065676544.1 (g24015.t1|P4HTM_MOUSE) 5.34 34.5 76.9% feature · violin
Cluster 32 15 g13063.t1 not mapped 5.06 33.5 75.3% feature · violin
Cluster 32 16 XP_065668716.1 (g10514.t1|THYN1_DANRE) 2.77 33.5 97.3% feature · violin
Cluster 32 17 XP_065657028.1 (g29670.t1|ENPL_BOVIN) 1.68 30.6 95.7% feature · violin
Cluster 32 18 g11571.t1 not mapped 4.55 30.3 70.2% feature · violin
Cluster 32 19 XP_065647400.1 (g9579.t1|S39A7_HUMAN) 2.87 29.6 78.9% feature · violin
Cluster 32 20 XP_065648768.1 (g21141.t1|MOS_PATPE) 4.93 29.4 66.0% feature · violin
Cluster 32 21 XP_065646225.1 (g1284.t2) 3.81 29.4 72.9% feature · violin
Cluster 32 22 XP_065651557.1 (g15667.t1|P4HA1_RAT) 4.20 29.2 68.4% feature · violin
Cluster 32 23 XP_065655747.1 (g13759.t1|SSRG_HUMAN) 1.59 29.1 90.9% feature · violin
Cluster 32 24 XP_065669187.1 (g32585.t1|CR3L1_MOUSE) 2.95 28.7 76.7% feature · violin
Cluster 32 25 XP_065674580.1 (g3088.t1|SSRD_MOUSE) 1.72 28.6 89.0% feature · violin
Cluster 32 26 XP_065649122.1 (g11872.t1|SLB2_DEIAC) 3.98 28.2 69.0% feature · violin
Cluster 32 27 XP_065672901.1 (g25645.t1|SSRB_CANLF) 1.72 27.9 86.7% feature · violin
Cluster 32 28 XP_065651535.1 (g8095.t1) 4.15 26.9 63.5% feature · violin
Cluster 32 29 g20545.t1 not mapped 5.53 26.5 57.8% feature · violin
Cluster 32 30 XP_065652065.1 (g10706.t1|FKBP2_CRYNJ) 4.75 26.5 59.7% feature · violin
Cluster 32 31 g2657.t1 not mapped 3.69 26.0 65.2% feature · violin
Cluster 32 32 XP_065647609.1 (g1722.t1) 3.95 25.7 62.6% feature · violin
Cluster 32 33 XP_065661531.1 (g16363.t1|MCFD2_RAT) 3.49 25.4 62.8% feature · violin
Cluster 32 34 XP_065666348.1 (g8682.t1) 5.05 25.4 56.1% feature · violin
Cluster 32 35 g6960.t1|HMGT_ONCMY not mapped 1.38 24.4 91.3% feature · violin
Cluster 32 36 XP_065675861.1 (g14168.t1|DAD1_ARAVE) 1.22 24.4 89.0% feature · violin
Cluster 32 37 XP_065675306.1 (g12703.t1|XYNB_NEOPA) 4.35 24.1 55.9% feature · violin
Cluster 32 38 XP_065655621.1 (g7799.t1|TMED7_RAT) 3.32 23.9 60.7% feature · violin
Cluster 32 39 XP_065650018.1 (g24398.t1|VGLU1_XENLA) 4.27 23.8 55.1% feature · violin
Cluster 32 40 g6452.t1|CO4A2_ASCSU not mapped 3.57 23.4 57.4% feature · violin
Cluster 32 41 XP_065652470.1 (g32982.t1|PDIA6_PONAB) 1.60 23.1 80.4% feature · violin
Cluster 32 42 XP_065672498.1 (g16770.t1|RS6_BRAFL) 0.52 23.0 100.0% feature · violin
Cluster 32 43 XP_065661365.1 (g30826.t1) 4.58 23.0 51.8% feature · violin
Cluster 32 44 XP_065666408.1 (g364.t1|MAA_BACSU) 2.49 22.5 64.6% feature · violin
Cluster 32 45 XP_065666903.1 (g22981.t1|CO5A1_RAT) 5.30 22.4 48.9% feature · violin
Cluster 32 46 XP_065657328.1 (g1374.t1|GGT1_HUMAN) 3.46 22.4 56.4% feature · violin
Cluster 32 47 XP_065669625.1 (g15375.t1) 3.63 22.3 54.2% feature · violin
Cluster 32 48 XP_065646618.1 (g6623.t1|ARSI_RAT) 5.03 22.3 49.2% feature · violin
Cluster 32 49 XP_065669194.1 (g32579.t1) 3.46 22.2 55.4% feature · violin
Cluster 32 50 XP_065649878.1 (g625.t1|RS4_ICTPU) 0.66 22.0 99.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 13 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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