Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g22747.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 18 1 g28987.t1 not mapped 9.05 22.6 100.0% feature · violin
Cluster 18 2 g33051.t1 not mapped 8.41 21.8 100.0% feature · violin
Cluster 18 3 g11572.t1|CO5A1_CRILO not mapped 7.56 21.5 100.0% feature · violin
Cluster 18 4 g2657.t1 not mapped 6.96 21.4 98.3% feature · violin
Cluster 18 5 g10351.t1|DKK3_MOUSE not mapped 7.05 21.3 96.0% feature · violin
Cluster 18 6 XP_065665854.1 (g11310.t1) 6.68 21.2 97.7% feature · violin
Cluster 18 7 g2661.t1|CO5A1_CRILO not mapped 7.59 21.0 99.4% feature · violin
Cluster 18 8 XP_065656523.1 (g13989.t1) 7.29 20.7 94.4% feature · violin
Cluster 18 9 XP_065669194.1 (g32579.t1) 6.45 20.3 93.2% feature · violin
Cluster 18 10 XP_065664008.1 (g14330.t1|HMCN1_HUMAN) 7.00 20.2 90.4% feature · violin
Cluster 18 11 XP_065668703.1 (g10499.t3) 6.26 20.1 93.8% feature · violin
Cluster 18 12 g19773.t1 not mapped 6.35 19.9 91.5% feature · violin
Cluster 18 13 g6452.t1|CO4A2_ASCSU not mapped 6.31 19.8 91.0% feature · violin
Cluster 18 14 XP_065672624.1 (g26968.t1|ERP60_SCHMA) 6.06 19.6 90.4% feature · violin
Cluster 18 15 XP_065670390.1 (g10044.t2) 5.04 18.9 94.9% feature · violin
Cluster 18 16 g17953.t1|COHA1_HUMAN not mapped 6.24 18.3 89.3% feature · violin
Cluster 18 17 XP_065651535.1 (g8095.t1) 5.48 17.9 83.6% feature · violin
Cluster 18 18 g27651.t1 not mapped 4.56 17.7 91.5% feature · violin
Cluster 18 19 g5994.t1 not mapped 5.20 17.7 84.2% feature · violin
Cluster 18 20 XP_065644346.1 (g25743.t1) 4.21 16.6 91.5% feature · violin
Cluster 18 21 g33457.t1 not mapped 6.37 16.6 74.6% feature · violin
Cluster 18 22 XP_065665308.1 (g5035.t1) 5.37 16.5 76.8% feature · violin
Cluster 18 23 XP_065670885.1 (g12820.t1) 5.50 16.1 74.6% feature · violin
Cluster 18 24 g29076.t1 not mapped 9.25 16.1 70.6% feature · violin
Cluster 18 25 XP_065670822.1 (g29711.t1|DPH7_HUMAN) 3.97 15.6 80.8% feature · violin
Cluster 18 26 XP_065670467.1 (g13876.t3|NCAN_RAT) 5.94 15.4 70.6% feature · violin
Cluster 18 27 g33632.t1 not mapped 5.96 15.4 69.5% feature · violin
Cluster 18 28 XP_065649122.1 (g11872.t1|SLB2_DEIAC) 4.26 15.3 77.4% feature · violin
Cluster 18 29 XP_065657328.1 (g1374.t1|GGT1_HUMAN) 4.38 15.2 75.1% feature · violin
Cluster 18 30 g12818.t1 not mapped 4.76 15.1 72.9% feature · violin
Cluster 18 31 XP_065670430.1 (g30703.t1) 5.67 15.1 75.7% feature · violin
Cluster 18 32 g30596.t1|THIO_PLAF7 not mapped 5.84 15.0 68.4% feature · violin
Cluster 18 33 g2656.t1 not mapped 5.48 14.8 70.1% feature · violin
Cluster 18 34 g24451.t1 not mapped 5.29 14.8 68.9% feature · violin
Cluster 18 35 XP_065663239.1 (g22747.t1) 7.16 14.3 63.3% feature · violin
Cluster 18 36 XP_065667057.1 (g21258.t1) 5.57 14.2 65.0% feature · violin
Cluster 18 37 g24452.t1 not mapped 4.51 14.2 68.4% feature · violin
Cluster 18 38 XP_065669249.1 (g25049.t1) 5.38 13.8 63.8% feature · violin
Cluster 18 39 g32623.t1 not mapped 8.76 13.8 60.5% feature · violin
Cluster 18 40 XP_065646225.1 (g1284.t2) 3.69 13.8 72.9% feature · violin
Cluster 18 41 XP_065676666.1 (g3981.t1|EVA1C_MOUSE) 7.02 13.7 61.0% feature · violin
Cluster 18 42 g30722.t1|SLB_PROJR not mapped 6.72 13.7 61.0% feature · violin
Cluster 18 43 XP_065669900.1 (g9036.t1) 4.59 13.6 65.5% feature · violin
Cluster 18 44 XP_065648894.1 (g19903.t1) 4.67 13.5 64.4% feature · violin
Cluster 18 45 XP_065646864.1 (g11755.t1) 4.80 13.3 63.3% feature · violin
Cluster 18 46 XP_065647311.1 (g7768.t2|M1AP_HUMAN) 5.23 13.2 61.6% feature · violin
Cluster 18 47 XP_065655300.1 (g2328.t1|JUN_SERCA) 6.04 13.1 59.3% feature · violin
Cluster 18 48 XP_065653872.1 (g16395.t1|AQP9_HUMAN) 6.60 13.1 58.2% feature · violin
Cluster 18 49 XP_065649727.1 (g2106.t2|NECA_HYDVU) 4.95 13.0 61.6% feature · violin
Cluster 18 50 XP_065664178.1 (g3346.t1) 4.53 12.9 62.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 21 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP