Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g2324.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 1 1 XP_065653781.1 (g12038.t1) 9.68 26.8 99.6% feature · violin
Cluster 1 2 g24627.t1|TRY3_SALSA not mapped 11.45 26.6 98.4% feature · violin
Cluster 1 3 XP_065673564.1 (g22659.t1) 9.27 26.5 99.6% feature · violin
Cluster 1 4 g13980.t1|COMA_CONMA not mapped 10.03 26.4 97.6% feature · violin
Cluster 1 5 g18528.t1 not mapped 9.09 26.3 97.6% feature · violin
Cluster 1 6 g18530.t1 not mapped 11.84 26.2 96.8% feature · violin
Cluster 1 7 g30647.t1|NAS15_CAEEL not mapped 8.95 26.2 97.2% feature · violin
Cluster 1 8 XP_065671085.1 (g9460.t1|SAP3_HUMAN) 7.98 26.1 98.8% feature · violin
Cluster 1 9 XP_065650496.1 (g24626.t1|TRY3_SALSA) 9.21 26.0 96.4% feature · violin
Cluster 1 10 g30759.t1|CEL3B_MOUSE not mapped 9.75 26.0 96.8% feature · violin
Cluster 1 11 g21131.t1 not mapped 8.07 26.0 98.8% feature · violin
Cluster 1 12 XP_065655907.1 (g29807.t1|BLC_VIBCH) 6.62 25.9 99.2% feature · violin
Cluster 1 13 XP_065644654.1 (g20117.t1) 8.42 25.9 98.8% feature · violin
Cluster 1 14 g15632.t1|VP302_LYCMC not mapped 6.75 25.8 99.2% feature · violin
Cluster 1 15 XP_065670502.1 (g13860.t1) 6.99 25.7 98.0% feature · violin
Cluster 1 16 g30764.t1|CEL3B_MOUSE not mapped 8.08 25.5 100.0% feature · violin
Cluster 1 17 g15015.t1|HE_PARLI not mapped 8.18 25.3 97.6% feature · violin
Cluster 1 18 g25722.t1|ACTP1_ANTAS not mapped 7.55 25.3 96.4% feature · violin
Cluster 1 19 g7895.t1|CTRC_MOUSE not mapped 8.49 25.3 98.0% feature · violin
Cluster 1 20 g28301.t1|MRC1_HUMAN not mapped 6.85 25.2 98.8% feature · violin
Cluster 1 21 XP_065663674.1 (g23353.t1|PRSS8_RAT) 7.89 25.0 94.4% feature · violin
Cluster 1 22 g5218.t1|COMA_CONMA not mapped 6.53 24.9 95.6% feature · violin
Cluster 1 23 XP_065669272.1 (g25078.t1|CBPA4_MOUSE) 7.15 24.8 94.0% feature · violin
Cluster 1 24 g30648.t1|NAS4_CAEEL not mapped 8.37 24.7 91.9% feature · violin
Cluster 1 25 XP_065674799.1 (g2789.t1) 6.78 24.3 92.3% feature · violin
Cluster 1 26 g4004.t1|MEP1B_HUMAN not mapped 8.13 23.8 88.7% feature · violin
Cluster 1 27 g3101.t1 not mapped 7.08 23.7 89.1% feature · violin
Cluster 1 28 XP_065653587.1 (g6659.t1|SAP3_MACFA) 8.18 23.0 86.7% feature · violin
Cluster 1 29 XP_065655121.1 (g21760.t1|NAS4_CAEEL) 7.75 23.0 87.1% feature · violin
Cluster 1 30 XP_065657688.1 (g11406.t1|LIPP_HORSE) 6.20 22.9 87.5% feature · violin
Cluster 1 31 XP_065668835.1 (g6032.t1|NAS13_CAEEL) 7.00 22.9 86.7% feature · violin
Cluster 1 32 g5401.t1 not mapped 8.59 22.8 85.9% feature · violin
Cluster 1 33 XP_065663764.1 (g1963.t1|GRM8_RAT) 6.10 22.7 89.1% feature · violin
Cluster 1 34 g22666.t1 not mapped 10.92 22.5 83.1% feature · violin
Cluster 1 35 g2786.t1 not mapped 5.91 22.1 84.7% feature · violin
Cluster 1 36 g3220.t1|COMA_CONMA not mapped 5.15 22.1 92.3% feature · violin
Cluster 1 37 g27119.t1 not mapped 4.38 21.7 98.4% feature · violin
Cluster 1 38 XP_065654385.1 (g2324.t1) 9.10 21.6 80.2% feature · violin
Cluster 1 39 XP_065651777.1 (g25410.t1) 6.43 21.4 81.9% feature · violin
Cluster 1 40 g32519.t1 not mapped 4.15 21.3 90.7% feature · violin
Cluster 1 41 g9485.t1 not mapped 5.86 21.2 81.9% feature · violin
Cluster 1 42 XP_065667755.1 (g5988.t1|AMID_ECOLI) 4.45 21.1 87.5% feature · violin
Cluster 1 43 XP_065656131.1 (g26848.t1) 6.50 21.0 83.9% feature · violin
Cluster 1 44 XP_065668355.1 (g11519.t1|SVEP1_MOUSE) 7.24 20.9 78.2% feature · violin
Cluster 1 45 XP_065643172.1 (g19249.t1) 5.55 20.9 81.9% feature · violin
Cluster 1 46 XP_065676689.1 (g10737.t1|PLCX1_ARTBC) 6.15 20.6 79.0% feature · violin
Cluster 1 47 g4811.t1|VMPA_LOXIN not mapped 11.30 20.2 74.6% feature · violin
Cluster 1 48 g3976.t1 not mapped 4.18 20.2 84.7% feature · violin
Cluster 1 49 g19853.t1 not mapped 8.94 20.2 74.6% feature · violin
Cluster 1 50 XP_065676432.1 (g9490.t1) 6.59 20.0 75.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 27 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP